PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6384_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 276aa    MW: 31103.9 Da    PI: 4.7485
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6384_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.7e-2195145256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr++  +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+ge
  RrC6384_p2  95 LYRGVRQRQ-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAMAYDQAAYQLRGE 145
                 59****999.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.72E-3494153No hitNo description
PROSITE profilePS5103223.32795152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-3295153IPR001471AP2/ERF domain
SMARTSM003801.8E-3795158IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2395153IPR016177DNA-binding domain
PfamPF008471.2E-1496145IPR001471AP2/ERF domain
PRINTSPR003671.6E-1196107IPR001471AP2/ERF domain
PRINTSPR003671.6E-11118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAAIDMFSSS TDHSDPFKEE LMKVLNPFTN ALSSLPPPVP NTIFGFNQST PLGLNQLTPY  60
QIHQIQNQLN QRRNTNIANL SPKPVPMKNM ATQKLYRGVR QRQWGKWVAE IRLPKNRTRL  120
WLGTFDTAEE AAMAYDQAAY QLRGELARLN FPHIKHEYGY GGGDRIFKPL HPSVEAKLEA  180
ICQSLRKTED DDLPCSETEL FPPKAEYQES EFGFLRADEN SFSDESLVGS SSPESGITTT  240
FLDFSDSGCD EIGSFVLEKF PSVEIDWDAI SKLSES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2194152160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2191152163ATERF1
3gcc_A1e-2191152163ATERF1
5wx9_A5e-21911631080Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892600.0AC189260.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021M22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469865.10.0PREDICTED: ethylene-responsive transcription factor ERF060
SwissprotO656651e-160ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A398ANB70.0A0A398ANB7_BRACM; Uncharacterized protein
STRINGBra011833.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-151ERF family protein