PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC62_p6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Nin-like | ||||||||
Protein Properties | Length: 994aa MW: 110191 Da PI: 6.3907 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 80.9 | 1.3e-25 | 597 | 677 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLg..............................vclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lg vc+T++KriCRq+GI+RWP+Rkik++ RrC62_p6 597 EKTISLDVLQQYFTGSLKDAAKSLGgslysmyrfmfwftyclhniltnlcivlasVCPTTMKRICRQHGISRWPSRKIKKV 677 799****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 13.515 | 586 | 697 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-22 | 599 | 677 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 7.85E-23 | 893 | 983 | No hit | No description |
SMART | SM00666 | 6.3E-26 | 898 | 980 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 26.956 | 898 | 980 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 4.2E-27 | 898 | 980 | No hit | No description |
Pfam | PF00564 | 1.1E-18 | 898 | 979 | IPR000270 | PB1 domain |
CDD | cd06407 | 4.00E-33 | 899 | 979 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 994 aa Download sequence Send to blast |
MCDPDDDTTA RNGVTPPSAS RSREILMDVD DLDLDGSWPL DQLIPYNLSS SSNRMISPIF 60 VSSSSSEQPC SPLWAFSDGG VNGNHATAGG YDGERISSAS GVSSSSFRLA DYPLFLPLAA 120 ENTAEKHNGF QIPSPLMSLE NTDNNNYCVI KERMTQALRY FKESTEQQQH VLAQVWAPVR 180 KNGRELLTTL GQPFVLNPNG NGLNQYRMIS LTYMFSVDSD CDIELGLPGR VFRQKLPEWT 240 PNVQYYSSKE FSRLDHALHY NVRGTLALPV FNLSGESCIG VVELIMTSEK IHYAPEVDKV 300 CKALEAVNLK SSEILDHQTT QLTLYPQICN ESRQNALAEI LEVLTVVCET HNLPLAQTWV 360 PCQHGSVLAN GGGLKKNCTS FDGSCMGQIC MSTTDMACYV VDAHVWGFRD ACLEHHLQKG 420 QGVAGRAFLN GGSCFCRDIT KFCKTQYPLV HYALMFKLTS CFAISLQSSY TGDDSYILEF 480 FLPSTITDEQ EQDSLLGSLL VTMKEHFQSL RVASGVDFGE DDDKLSFEII QALPDKKIHS 540 KIESIRVPFS GFKSHTRETP QPAVQSSDPV NRKTKVATVH GVVKEKKKTE KKRGKTEKTI 600 SLDVLQQYFT GSLKDAAKSL GGSLYSMYRF MFWFTYCLHN ILTNLCIVLA SVCPTTMKRI 660 CRQHGISRWP SRKIKKVNRS ITKLKRVIES VQRTDGGLDL ASMAVSSIPW TNGQTAAQPL 720 NSPSGSKQPE VPNTNHSPNH WSSDHSPQEP NGSPELPSNG HKRSRTGDES AGTPTSHGSC 780 DGNQLDETKV PNQDPLFTVG ASPGLCFPPY SRDHDVSAAS FAMPNRLLGN IDHFRGMPIE 840 DAGSSKDLRN LCSSTPFHDK FPEQKWMNND NNSNRYAPAK EEAVANTTRE PSDSEMKTVT 900 IKASYKEDII RFRISSGSGI MQLKDEVAKR LKLEAGTFDI KYLDDDNEWV LIACDVDLQE 960 CLEIPRLSRS NIVRLLVHDV TTNLGSSCES TGEM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL109619 | 0.0 | AL109619.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project). | |||
GenBank | AL161560 | 0.0 | AL161560.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 60. | |||
GenBank | ATAC002343 | 0.0 | AC002343.1 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013595230.1 | 0.0 | PREDICTED: protein NLP7-like | ||||
Swissprot | Q84TH9 | 0.0 | NLP7_ARATH; Protein NLP7 | ||||
TrEMBL | A0A3P6F425 | 0.0 | A0A3P6F425_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g109290.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2507 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |