PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC62_p6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Nin-like
Protein Properties Length: 994aa    MW: 110191 Da    PI: 6.3907
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC62_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK80.91.3e-25597677252
    RWP-RK   2 ekeisledlskyFslpikdAAkeLg..............................vclTvLKriCRqyGIkRWPhRkiksl 52 
               ek+isl++l++yF +++kdAAk+Lg                              vc+T++KriCRq+GI+RWP+Rkik++
  RrC62_p6 597 EKTISLDVLQQYFTGSLKDAAKSLGgslysmyrfmfwftyclhniltnlcivlasVCPTTMKRICRQHGISRWPSRKIKKV 677
               799****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.515586697IPR003035RWP-RK domain
PfamPF020421.1E-22599677IPR003035RWP-RK domain
SuperFamilySSF542777.85E-23893983No hitNo description
SMARTSM006666.3E-26898980IPR000270PB1 domain
PROSITE profilePS5174526.956898980IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2404.2E-27898980No hitNo description
PfamPF005641.1E-18898979IPR000270PB1 domain
CDDcd064074.00E-33899979No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 994 aa     Download sequence    Send to blast
MCDPDDDTTA RNGVTPPSAS RSREILMDVD DLDLDGSWPL DQLIPYNLSS SSNRMISPIF  60
VSSSSSEQPC SPLWAFSDGG VNGNHATAGG YDGERISSAS GVSSSSFRLA DYPLFLPLAA  120
ENTAEKHNGF QIPSPLMSLE NTDNNNYCVI KERMTQALRY FKESTEQQQH VLAQVWAPVR  180
KNGRELLTTL GQPFVLNPNG NGLNQYRMIS LTYMFSVDSD CDIELGLPGR VFRQKLPEWT  240
PNVQYYSSKE FSRLDHALHY NVRGTLALPV FNLSGESCIG VVELIMTSEK IHYAPEVDKV  300
CKALEAVNLK SSEILDHQTT QLTLYPQICN ESRQNALAEI LEVLTVVCET HNLPLAQTWV  360
PCQHGSVLAN GGGLKKNCTS FDGSCMGQIC MSTTDMACYV VDAHVWGFRD ACLEHHLQKG  420
QGVAGRAFLN GGSCFCRDIT KFCKTQYPLV HYALMFKLTS CFAISLQSSY TGDDSYILEF  480
FLPSTITDEQ EQDSLLGSLL VTMKEHFQSL RVASGVDFGE DDDKLSFEII QALPDKKIHS  540
KIESIRVPFS GFKSHTRETP QPAVQSSDPV NRKTKVATVH GVVKEKKKTE KKRGKTEKTI  600
SLDVLQQYFT GSLKDAAKSL GGSLYSMYRF MFWFTYCLHN ILTNLCIVLA SVCPTTMKRI  660
CRQHGISRWP SRKIKKVNRS ITKLKRVIES VQRTDGGLDL ASMAVSSIPW TNGQTAAQPL  720
NSPSGSKQPE VPNTNHSPNH WSSDHSPQEP NGSPELPSNG HKRSRTGDES AGTPTSHGSC  780
DGNQLDETKV PNQDPLFTVG ASPGLCFPPY SRDHDVSAAS FAMPNRLLGN IDHFRGMPIE  840
DAGSSKDLRN LCSSTPFHDK FPEQKWMNND NNSNRYAPAK EEAVANTTRE PSDSEMKTVT  900
IKASYKEDII RFRISSGSGI MQLKDEVAKR LKLEAGTFDI KYLDDDNEWV LIACDVDLQE  960
CLEIPRLSRS NIVRLLVHDV TTNLGSSCES TGEM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1096190.0AL109619.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project).
GenBankAL1615600.0AL161560.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 60.
GenBankATAC0023430.0AC002343.1 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595230.10.0PREDICTED: protein NLP7-like
SwissprotQ84TH90.0NLP7_ARATH; Protein NLP7
TrEMBLA0A3P6F4250.0A0A3P6F425_BRAOL; Uncharacterized protein
STRINGBo7g109290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25072666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.10.0NIN like protein 7
Publications ? help Back to Top
  1. Xu N, et al.
    The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators.
    Plant Cell, 2016. 28(2): p. 485-504
    [PMID:26744214]
  2. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  3. Yu LH, et al.
    Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation.
    Sci Rep, 2016. 6: p. 27795
    [PMID:27293103]
  4. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  5. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]
  6. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  7. Liu KH, et al.
    Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks.
    Nature, 2017. 545(7654): p. 311-316
    [PMID:28489820]
  8. Li Z, et al.
    The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1.
    New Phytol., 2017. 216(4): p. 1205-1222
    [PMID:28850721]
  9. Cao H, et al.
    Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation.
    Front Plant Sci, 2017. 8: p. 1703
    [PMID:29051766]
  10. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]
  11. Karve RA,Iyer-Pascuzzi AS
    Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release.
    Plant Signal Behav, 2018. 13(1): p. e1414122
    [PMID:29215953]
  12. Zhao L, et al.
    The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium.
    Sci Rep, 2018. 8(1): p. 1487
    [PMID:29367694]