PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6250_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 339aa MW: 37426.5 Da PI: 8.6108

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6250_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.5	1.7e-08	1	41	46	86
trihelix 46 spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 s++qC++k+e+l+kry+ +k+++ +r + ss++ +f l+ RrC6250_p3 1 SAIQCRHKIEKLRKRYRGEKQRSLNRPGKFSSSWDLFPVLD 41 799*********************9999*****9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.2E-7	1	43	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
SAIQCRHKIE KLRKRYRGEK QRSLNRPGKF SSSWDLFPVL DAMEFAPVTP TAAEPYDPDP 60 DNDEESNGLD GFRVRSKRSG KFDGFGVRSR SKSQMKMYGG GGFDSDHDSG GGGFGLKRRY 120 NGNPKVSSGG GDFDADSDEE IVLVPKSGRL KGSSHGKPSS GEFGGGFPLK SFGDRSFASH 180 GFNKAKSFGK PEANFSPEMD YDDEFDEGFS PRIQHGRSSS RANGYGRKEG SYLRGNNTGV 240 VSNGYGSSSR FKHEQMNAVA DVESADPIDE VVSSVKMLTE MFVRVENSKM EMMREMEKTR 300 MEMELKHCQM MLESQQQIIG AFAEALSEKK STNARRPGS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232568	0.0	AC232568.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH122A22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018472369.1	0.0	PREDICTED: uncharacterized protein LOC108843634
Swissprot	O23550	1e-135	FRIP2_ARATH; Protein FIP2
TrEMBL	A0A078HCS5	0.0	A0A078HCS5_BRANA; BnaC01g21240D protein
TrEMBL	A0A0D3A7F0	0.0	A0A0D3A7F0_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6G0F3	0.0	A0A3P6G0F3_BRAOL; Uncharacterized protein
STRING	Bo1g052990.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10483	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	5e-10	Trihelix family protein

Publications ? help Back to Top
Sakai T, et al. The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots. Plant J., 2012. 70(2): p. 303-14 [PMID:22122664]