PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6243_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 279aa    MW: 31486.6 Da    PI: 9.3001
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6243_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001527123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ykC  C ksF +   L  H+r+H
  RrC6243_p1  5 YKCRFCLKSFVNGRALGEHMRSH 27
                9*********************9 PP
2zf-C2H215.54.9e-05169191123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ Cgk+F++   L  H  +H
  RrC6243_p1 169 FTCETCGKVFKSYQALGGHRASH 191
                 89***********9999998887 PP
3zf-C2H210.70.0017216238123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C ++F +   L  H r+H
  RrC6243_p1 216 HECPICLRVFASGQALGGHKRSH 238
                 79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.1E-4227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.34E-9427No hitNo description
PfamPF139122.4E-5427IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.429527IPR007087Zinc finger, C2H2
SMARTSM003550.0046527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576672.34E-9164191No hitNo description
PfamPF139124.4E-11169193IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.053169196IPR007087Zinc finger, C2H2
SMARTSM003550.02169191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
PfamPF139124.7E-12216238IPR007087Zinc finger, C2H2
SMARTSM003550.23216238IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058216238IPR007087Zinc finger, C2H2
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MESYYKCRFC LKSFVNGRAL GEHMRSHVPS LHKFSIQEEE GERASQLNDE TESDVSSSSS  60
MMDPKFANES ETESSSMKIT NLTRKRSKRT RKLETFATKK RKTSQIGYKT EPECEPPHSS  120
ASDTTRDEDL AFCLMLLSRD KCKNKTSSKV EISTEASEGH NKSSKKERFT CETCGKVFKS  180
YQALGGHRAS HKKNRVSNKT EFENVVVVVA AEKRIHECPI CLRVFASGQA LGGHKRSHGI  240
GNLSVVHHQV RVESVKQKRM IDLNLPAPTH EEEVSVVFQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
183101RKRSKRTRKLETFATKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640190.21e-152zinc finger protein ZAT9-like
RefseqXP_022570193.11e-152zinc finger protein ZAT9-like
RefseqXP_022570194.11e-152zinc finger protein ZAT9-like
RefseqXP_022570195.11e-152zinc finger protein ZAT9-like
RefseqXP_022570196.11e-152zinc finger protein ZAT9-like
RefseqXP_022570197.11e-152zinc finger protein ZAT9-like
RefseqXP_022570198.11e-152zinc finger protein ZAT9-like
RefseqXP_022570199.11e-152zinc finger protein ZAT9-like
RefseqXP_022570200.11e-152zinc finger protein ZAT9-like
SwissprotQ9M2021e-117ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A3P6FVQ51e-151A0A3P6FVQ5_BRAOL; Uncharacterized protein
STRINGBo6g077190.11e-150(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-102C2H2-like zinc finger protein