PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC623_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 647aa MW: 72619.8 Da PI: 6.7685

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC623_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.2	4e-29	497	546	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ek+isle+l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki++ RrC623_p4 497 EKTISLEVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINK 546 79**********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.074	486	567	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-26	499	546	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.56E-18	541	632	No hit	No description
SMART	SM00666	2.8E-20	542	629	IPR000270	PB1 domain
PROSITE profile	PS51745	17.434	542	629	IPR000270	PB1 domain
CDD	cd06407	1.36E-31	546	628	No hit	No description
Gene3D	G3DSA:3.10.20.240	9.9E-23	546	629	No hit	No description
Pfam	PF00564	3.4E-16	546	628	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence Send to blast
MELDDLDLGS SWPLDQISFA TPNNFRFPSS EQQPFSPLWS FSSGDAADTY CAIKAKMTQA 60 LRFFKESTGQ QHLLAQVWAP VKNRNGRYLL TTSGQPFFLG PNSNGLNQYR MVSLTYMFSL 120 DSERDDGELG LPGRVFRKKL PEWTPNVQYY SSKEFSRLGH ALNYNVQGTL ALPVFEPSRQ 180 LCVGVVELIM TSPKINYAPE AVNLKTSEIL NHESTQVRAS PVPLYFTLNE ICNEGRQNAL 240 AEILEILTVV CETYKLPLAQ TWVPCRHRSV LAFGGGFKKS CSSFDGSCMG KVCMSTSDLA 300 VYVVDAHVWG FRDACAEHHL QKGQGVAGRA FLSGNLCFCR DVTRFCKTDY PLVHYARMFK 360 LTSCFAVCLK STYTGDDEYV LEFFLPPGIT DRGEQDSLLG SLFQTMKQHY SSLKVVSGTE 420 LFENEMSIEV VEASEDGMVY SKLEPIQVHH HHLQLNAPEE KLSLKPVENK EVAFQTLNPS 480 PEAKNEKKSE RKRGKTEKTI SLEVLQQYFS GSLKDAAKSL GVCPTTMKRI CRQHGISRWP 540 SRKINKATYR EDIIRFKISP ESISIAELKQ QVAKRLKLET GAFDLKYLDD DKEWVSVSCD 600 ADLTECLIDT SSVVTAAKAN TLRLSVHDVT PNFGSSCESS EEIMMCL

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence Send to blast

MELDDLDLGS SWPLDQISFA TPNNFRFPSS EQQPFSPLWS FSSGDAADTY CAIKAKMTQA  60
LRFFKESTGQ QHLLAQVWAP VKNRNGRYLL TTSGQPFFLG PNSNGLNQYR MVSLTYMFSL  120
DSERDDGELG LPGRVFRKKL PEWTPNVQYY SSKEFSRLGH ALNYNVQGTL ALPVFEPSRQ  180
LCVGVVELIM TSPKINYAPE AVNLKTSEIL NHESTQVRAS PVPLYFTLNE ICNEGRQNAL  240
AEILEILTVV CETYKLPLAQ TWVPCRHRSV LAFGGGFKKS CSSFDGSCMG KVCMSTSDLA  300
VYVVDAHVWG FRDACAEHHL QKGQGVAGRA FLSGNLCFCR DVTRFCKTDY PLVHYARMFK  360
LTSCFAVCLK STYTGDDEYV LEFFLPPGIT DRGEQDSLLG SLFQTMKQHY SSLKVVSGTE  420
LFENEMSIEV VEASEDGMVY SKLEPIQVHH HHLQLNAPEE KLSLKPVENK EVAFQTLNPS  480
PEAKNEKKSE RKRGKTEKTI SLEVLQQYFS GSLKDAAKSL GVCPTTMKRI CRQHGISRWP  540
SRKINKATYR EDIIRFKISP ESISIAELKQ QVAKRLKLET GAFDLKYLDD DKEWVSVSCD  600
ADLTECLIDT SSVVTAAKAN TLRLSVHDVT PNFGSSCESS EEIMMCL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018457723.1	0.0	PREDICTED: protein NLP6
Refseq	XP_018457750.1	0.0	PREDICTED: protein NLP6-like
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	M4FII5	0.0	M4FII5_BRARP; Uncharacterized protein
STRING	Bra040914.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]