PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6222_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 172aa    MW: 19401.2 Da    PI: 5.9042
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6222_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-1670120255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  RrC6222_p1  70 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESNVDAARAYDCAAFKLRG 120
                 7********.**********954..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-3169129IPR001471AP2/ERF domain
PfamPF008472.5E-1170120IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2370129IPR016177DNA-binding domain
SMARTSM003801.0E-3570134IPR001471AP2/ERF domain
CDDcd000181.67E-2870128No hitNo description
PROSITE profilePS5103224.39570128IPR001471AP2/ERF domain
PRINTSPR003672.9E-137182IPR001471AP2/ERF domain
PRINTSPR003672.9E-13110130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MNQVPKQEPD SPVLDPDSFV KEFLQVEVES PTSTGISEQN SSSHETDQSV SARKKTERFE  60
EQEEEEEQRH YRGVRRRPWG KFAAEIRDPA KKGSRIWLGT FESNVDAARA YDCAAFKLRG  120
RKAVLNFPLD AGKYEAPVNS GRKRKRSDVQ EELQRSQSNS SSSSSDGGTT CE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2969141469ATERF1
3gcc_A1e-2969141469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507111e-177AY350711.1 Sisymbrium irio clone BAC Sio11E11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446035.11e-105PREDICTED: ethylene-responsive transcription factor ERF106
SwissprotQ9LY052e-80EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLQ6V5I22e-94Q6V5I2_SISIR; AP2 transcription factor
STRINGBra009250.1-P1e-94(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.17e-77ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]