PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC621_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 203aa    MW: 23199.1 Da    PI: 5.01
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC621_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.4e-172979155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
               + y+G+r++    +Wv+eIr+p     +  +r++lg++ tae+Aa+a++ a+ +l+g
  RrC621_p7 29 PVYRGIRRRN-GDKWVCEIREP-----ThqRRIWLGTYPTAEMAARAHDVAAYALRG 79
               68*****877.9*********8.....336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.7E-122979IPR001471AP2/ERF domain
SMARTSM003803.9E-253093IPR001471AP2/ERF domain
PROSITE profilePS5103222.1683087IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-203089IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.3E-303089IPR001471AP2/ERF domain
PRINTSPR003671.2E-73142IPR001471AP2/ERF domain
CDDcd000184.17E-273189No hitNo description
PRINTSPR003671.2E-75369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0050826Biological Processresponse to freezing
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDNNDEVILA ETRPKKRAGR IVFKETRHPV YRGIRRRNGD KWVCEIREPT HQRRIWLGTY  60
PTAEMAARAH DVAAYALRGR SACLNFADSA WRLPVPESTD PDVIRRVAAE AAEMFRPTDG  120
LMVLPSYSNE VYLGSGSGSG WEERNMYGYV EEEEVSTTMM RLASEPLMSP PRSYVEGEGM  180
TTSNVYMGEE MCYEDTSLWS YSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-151786371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00137DAPTransfer from AT1G12610Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0135940.0KJ013594.1 Brassica rapa subsp. chinensis CBF6A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435225.11e-140PREDICTED: dehydration-responsive element-binding protein 1F-like
RefseqXP_018435231.11e-140PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotQ9LN861e-106DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLA0A078GMZ31e-134A0A078GMZ3_BRANA; BnaA09g47030D protein
TrEMBLA0A3P5Y8Y21e-134A0A3P5Y8Y2_BRACM; Uncharacterized protein
TrEMBLM4EDV31e-134M4EDV3_BRARP; Uncharacterized protein
TrEMBLW8Q8V41e-134W8Q8V4_BRARC; CBF6A
STRINGBra026963.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.11e-108ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]