PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6204_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YC
Protein Properties Length: 281aa    MW: 31159.5 Da    PI: 4.6302
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6204_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC44.63.2e-146791897
       NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97
                ++++P arikki++adedv +i+  +Pvl+sk+ elf+ +l  r++  + e   +t+    +       ++fdfl ++v 
  RrC6204_p2  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLY------NVFDFLREVVS 79
                5789***********************************************999998765554......56777777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-23368IPR009072Histone-fold
SuperFamilySSF471131.55E-15483IPR009072Histone-fold
PfamPF008081.5E-17867IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK  60
TVSSLHLYNV FDFLREVVSK VPDYGHAQGQ GQGPADVTMD DRTISKRRKP VGDEVNDSDE  120
EYKKSKTQEM GNAKPSGRGG RGRGRGKGRG GRAARAAERE NLNREIELES FMVEEKPPQD  180
STQVHESVSA PHEIEKKEGI AAASNEDTTQ QQLQSPKEGN DFDLNAESLD LNETKPAPVA  240
AATASEEYTC WSMELGQIDP AQFASLGKRI DEEEDYDEEE G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A9e-20273576Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140149RGRGRGKGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530671e-156AK353067.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490427.11e-173PREDICTED: dr1-associated corepressor-like isoform X2
TrEMBLA0A398A8481e-148A0A398A848_BRACM; Uncharacterized protein
STRINGBo3g064920.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35062458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-117nuclear factor Y, subunit C11