PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC6204_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YC | ||||||||
Protein Properties | Length: 281aa MW: 31159.5 Da PI: 4.6302 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 44.6 | 3.2e-14 | 6 | 79 | 18 | 97 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ++++P arikki++adedv +i+ +Pvl+sk+ elf+ +l r++ + e +t+ + ++fdfl ++v RrC6204_p2 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLY------NVFDFLREVVS 79 5789***********************************************999998765554......56777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.0E-23 | 3 | 68 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.55E-15 | 4 | 83 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-17 | 8 | 67 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK 60 TVSSLHLYNV FDFLREVVSK VPDYGHAQGQ GQGPADVTMD DRTISKRRKP VGDEVNDSDE 120 EYKKSKTQEM GNAKPSGRGG RGRGRGKGRG GRAARAAERE NLNREIELES FMVEEKPPQD 180 STQVHESVSA PHEIEKKEGI AAASNEDTTQ QQLQSPKEGN DFDLNAESLD LNETKPAPVA 240 AATASEEYTC WSMELGQIDP AQFASLGKRI DEEEDYDEEE G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 9e-20 | 2 | 73 | 5 | 76 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 149 | RGRGRGKGRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353067 | 1e-156 | AK353067.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490427.1 | 1e-173 | PREDICTED: dr1-associated corepressor-like isoform X2 | ||||
TrEMBL | A0A398A848 | 1e-148 | A0A398A848_BRACM; Uncharacterized protein | ||||
STRING | Bo3g064920.1 | 1e-148 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3506 | 24 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-117 | nuclear factor Y, subunit C11 |