PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC61_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 370aa    MW: 41240.8 Da    PI: 6.769
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC61_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.69.7e-3067181366
       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................................... 65 
               g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl++ak+ +++l+ +                                      
  RrC61_p7  67 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLEAAKEDVDKLPPLqfphgfnqmypnlffgnsgigesssstsafpgtnlgfl 167
               78*************************************************************66666665555555555555444433333333333333 PP

       TCP  66 .............s 66 
                            s
  RrC61_p7 168 esydlggsslrsrS 181
               33333333333220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.77368126IPR017887Transcription factor TCP subgroup
PfamPF036349.7E-2768204IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MRSRECNEDE IQTKQEGDHN DNNNHQVDLN NMLQQQQQNQ PSSLSSSRQW TSAFRNPRIV  60
RVSRTFGGKD RHSKVCTVRG LRDRRIRLSV PTAIQLYDLQ DRLGLSQPSK VVDWLLEAAK  120
EDVDKLPPLQ FPHGFNQMYP NLFFGNSGIG ESSSSTSAFP GTNLGFLESY DLGGSSLRSR  180
SRIQDTTTTP RESFDLDKGK WIKHDENSNH HQGHGFDTNH QHFSLTNPYS NNNSTSSYYN  240
LGHLQHSLDQ SGNNVTVAIS NVPSNNNNNN LNMPPPSSAG DGSQLFFGPP PPAMSSLFPT  300
YPSFLGASQH QHHHVVDGAG NLQLFSSNAN TASQQQMMTG NSSLIRPFHH LMSSNHDTDR  360
HSSDDNDSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1973127155Putative transcription factor PCF6
5zkt_B5e-1973127155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488994.10.0PREDICTED: transcription factor TCP5
SwissprotQ9FME30.0TCP5_ARATH; Transcription factor TCP5
TrEMBLA0A078J6M40.0A0A078J6M4_BRANA; BnaC07g49840D protein
TrEMBLA0A3P6E5P10.0A0A3P6E5P1_BRAOL; Uncharacterized protein
STRINGBo7g098260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-144TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]