PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC6161_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 10092.5 Da PI: 9.7481 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 65 | 1.4e-20 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++++G g+W++ +++ g++R++k+c++rw +yl RrC6161_p1 14 KGPWTPEEDQKLINYIRKHGHGSWRALPKEAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.729 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-19 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.9E-26 | 15 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.15E-13 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-10 | 65 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 8.874 | 66 | 88 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MGRSPCCDES GLKKGPWTPE EDQKLINYIR KHGHGSWRAL PKEAGLNRCG KSCRLRWTNY 60 LRPDIKRGNF TAEEDQTIIN LHSLLGNK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-19 | 12 | 88 | 5 | 80 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228268 | 1e-107 | AK228268.1 Arabidopsis thaliana mRNA for MYB family transcription factor like protein, complete cds, clone: RAFL14-72-D06. | |||
GenBank | ATAC018363 | 1e-107 | AC018363.8 Arabidopsis thaliana chromosome III BAC F13E7 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 1e-107 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437345.1 | 5e-59 | PREDICTED: transcription factor MYB3-like | ||||
Swissprot | Q9S9Z2 | 4e-53 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A0D3AFX8 | 3e-57 | A0A0D3AFX8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A178VA47 | 2e-57 | A0A178VA47_ARATH; MYB107 | ||||
TrEMBL | A0A3P6GB01 | 3e-57 | A0A3P6GB01_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g155040.1 | 5e-58 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02940.1 | 3e-61 | myb domain protein 107 |
Publications ? help Back to Top | |||
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