PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6137_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 787aa    MW: 89985.4 Da    PI: 9.8725
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6137_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.88.5e-23113207398
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   +++s++lk++ l lp   ++++ ++k+++ +++l +++g+sW+v+l+++ ++g+y++++GW++F+ +n+ k+g+ +vF l+g+ ++++++ v+ 
  RrC6137_p2 113 VSEVTSSNLKLDTLNLPVGATSSNALNKRCH-EMILVNKEGESWTVRLRFKESGGMYYIRQGWRRFCLDNRRKVGELFVFNLVGDGKTTPMLCVCP 207
                 56789**********************9887.*****************************************************9999***9996 PP
2B334.53.7e-11245342199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT-.-TT-EEEEEE-SSSEE..EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangL.kegDfvvFkldgrsefelvvkvf 97 
                 f++++++ +++k++ l+lp  f++++g++k   k+++l+d +g +   kl     + gr  l++GWk F++an++ k g+++ ++l++ ++  + +k++
  RrC6137_p2 245 FLTITLTRYNFKTSKLILPIAFTNTNGLSK--YKEIILMDMHGVKRLTKLVQeGPHNGRRGLGRGWKLFCEANDVfKIGESFGLELIW-EDSVPILKFC 340
                 7788999********************995..558********999999977755555566*************846***********.5555899988 PP

                 -S CS
          B3  98 rk 99 
                 +k
  RrC6137_p2 341 SK 342
                 76 PP
3B347.43.4e-153454161795
                 E--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3  17 vlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  +p  f++++ +   + +kt +l++  sg +Wev +  ++++    lt+GWkeFv a++L++gD++v++++g+  f  +v+
  RrC6137_p2 345 NIPVAFFSKNvQ-GRNIHKTAKLRSdASGTTWEVVI--DGRR----LTGGWKEFVTAHDLRAGDVLVLRHEGDVVF--HVT 416
                 59********63.44688899999889*********..9998....***********************9987777..665 PP
4B334.24.5e-114855423596
                 EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3  35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 ++ l +e+grsW++ l    ++++ +l+ GW++F++ang++ g   +Fkl+  +++++v+++
  RrC6137_p2 485 KIELLNETGRSWKLSL--VHHKSGSYLRHGWRSFCSANGINGGRY-TFKLVL-KSETPVIRL 542
                 799*************..66666678***************9985.999876.666677776 PP
5B366.53.8e-21562652798
                 .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ++++l+++ l+lp++f++++g+ ke+  +++l++ +g +W + l+ + + +++v+++GW++F++angLk++D + Fkl+g +++++v++++ 
  RrC6137_p2 562 TPSSLRTDALYLPRRFVNSNGLMKERCCEMILKNDNGGTWCLVLRRNETNETTVISRGWRSFCHANGLKVRDPFRFKLVG-TGEKPVLQLCP 652
                 667778888***********9999999*****************98888889**************************99.77779999986 PP
6B364.71.4e-20687783199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f++ +++ ++ ks+ l+lp +f++ +g++k++  ++tl+ ++g  W v+l+ ++k+gr+ l++GWk+F++a+g+k g+++v++l++++++ +v+k+++k
  RrC6137_p2 687 FVTLTVTQYSIKSNKLRLPLRFTRVNGINKAG--KITLMCQEGVNWMVRLTNENKGGRMRLGRGWKGFCEAHGVKLGESFVLELMREKDACPVLKFCNK 783
                 7788999********************99887..799**************9*********************************99*999***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-63893IPR015300DNA-binding pseudobarrel domain
CDDcd100173.65E-17111207No hitNo description
SuperFamilySSF1019364.9E-17111200IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.606111209IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-18111203IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.7E-25112209IPR003340B3 DNA binding domain
PfamPF023622.4E-21113207IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-15237342IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-14241343IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-9244341No hitNo description
PfamPF023625.1E-11245342IPR003340B3 DNA binding domain
SMARTSM010191.1E-16245343IPR003340B3 DNA binding domain
PROSITE profilePS508638.6245342IPR003340B3 DNA binding domain
SMARTSM010192.9E-10344421IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-17345423IPR015300DNA-binding pseudobarrel domain
PfamPF023625.3E-10346413IPR003340B3 DNA binding domain
CDDcd100178.05E-12346416No hitNo description
PROSITE profilePS5086311.364346421IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-16346427IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-9454536IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-10454540IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-11461546IPR003340B3 DNA binding domain
CDDcd100177.92E-6484543No hitNo description
PfamPF023627.2E-9485543IPR003340B3 DNA binding domain
PROSITE profilePS5086310.306485546IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-20552655IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-18552652IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.944556653IPR003340B3 DNA binding domain
SMARTSM010191.1E-26557654IPR003340B3 DNA binding domain
PfamPF023625.3E-20561653IPR003340B3 DNA binding domain
CDDcd100178.65E-18561652No hitNo description
Gene3DG3DSA:2.40.330.102.6E-21680783IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-20684781IPR015300DNA-binding pseudobarrel domain
PfamPF023625.9E-20687783IPR003340B3 DNA binding domain
SMARTSM010199.1E-24687784IPR003340B3 DNA binding domain
CDDcd100172.22E-14687772No hitNo description
PROSITE profilePS5086314.833687783IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MGNTSDPNLI FFFFKVQRIL SSFLLLKLYE MVNQPLESPS NPHFFQPLLP GFDTHLTIPV  60
AFFSKYIERK NKQRTAKLRS DASDRTWEVK IEGNGLKPKT EPMSSFSFDY CFVSEVTSSN  120
LKLDTLNLPV GATSSNALNK RCHEMILVNK EGESWTVRLR FKESGGMYYI RQGWRRFCLD  180
NRRKVGELFV FNLVGDGKTT PMLCVCPEEE CSELMSKHLS RERGSRKTKK RSRWVASSSS  240
RRNRFLTITL TRYNFKTSKL ILPIAFTNTN GLSKYKEIIL MDMHGVKRLT KLVQEGPHNG  300
RRGLGRGWKL FCEANDVFKI GESFGLELIW EDSVPILKFC SKVKNIPVAF FSKNVQGRNI  360
HKTAKLRSDA SGTTWEVVID GRRLTGGWKE FVTAHDLRAG DVLVLRHEGD VVFHVTALGP  420
SCCEVEYTTL DDCDEHKDTV VVLEINQTNE EDYSSSDHSC FVANVTVSSL HEDKLVKRLS  480
NTYCKIELLN ETGRSWKLSL VHHKSGSYLR HGWRSFCSAN GINGGRYTFK LVLKSETPVI  540
RLYHSEHRHE DDTHSYLVGS LTPSSLRTDA LYLPRRFVNS NGLMKERCCE MILKNDNGGT  600
WCLVLRRNET NETTVISRGW RSFCHANGLK VRDPFRFKLV GTGEKPVLQL CPAESNRKRR  660
DVEYSEGNYV HTLSKREASS SPCQNRFVTL TVTQYSIKSN KLRLPLRFTR VNGINKAGKI  720
TLMCQEGVNW MVRLTNENKG GRMRLGRGWK GFCEAHGVKL GESFVLELMR EKDACPVLKF  780
CNKVHCV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108913.10.0PREDICTED: B3 domain-containing protein REM17-like
TrEMBLA0A3P6BE350.0A0A3P6BE35_BRAOL; Uncharacterized protein
STRINGBra010225.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-113B3 family protein