PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6105_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 376aa    MW: 41923.5 Da    PI: 10.2114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6105_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13201246555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L+ A e++ sLq
  RrC6105_p1 201 HMISERKRREKLNDSFQALRSLLPPG-----TKKDKASVLTTAREHLTSLQ 246
                 8899********************97.....8*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-15188260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.059196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-10198246No hitNo description
Gene3DG3DSA:4.10.280.103.6E-15200264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-11201246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-13202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MKIEASLRDW FPEDFSRKTS PINSDYLWPP PPPSSSSSSL RSLDSPQNAS EYSSLLFPLI  60
PKPSTTTDAV NVPLLAPGTT ATTTNMIHQQ HQVPLFRNRE HEDEVMARAI LAVITASSSP  120
SSTSSSPQRK GRATAFKRYY CMTSGGGGSG VRRKSMMKRA ISYYNRLNID RRERFVRENA  180
TDGGGDGSGG GRVPTATQLH HMISERKRRE KLNDSFQALR SLLPPGTKKD KASVLTTARE  240
HLTSLQGDIS KLLERNRELE AKLAGEREME NVLQPDKRFN VSIIHIPEST SRERVLDLRV  300
VLRGDNIRAD DLIIRLLEFL RQINNVSLIS INGKARTSED GVTTVVLVSF RLKIEGECDE  360
SAFQEAVRRV VADLAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERKRRE
2205210RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469030.10.0PREDICTED: putative transcription factor bHLH041
SwissprotQ9LTS41e-174BH041_ARATH; Putative transcription factor bHLH041
TrEMBLA0A078G7U10.0A0A078G7U1_BRANA; BnaA02g08430D protein
STRINGBo2g032920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-160bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]