PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC60_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 583aa    MW: 64860.7 Da    PI: 9.8079
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC60_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.5e-114074237
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     ++W t+E++ll++avk++G  +W+++a+++  +Rt 
         RrC60_p3 40 QAWGTWEELLLACAVKRHGFCDWDSVAAEVR-TRTS 74
                     79*****************************.**96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-43274IPR009057Homeodomain-like
SuperFamilySSF466891.88E-53476IPR009057Homeodomain-like
SMARTSM007173.2E-43896IPR001005SANT/Myb domain
PfamPF002495.2E-104074IPR001005SANT/Myb domain
CDDcd001671.39E-64193No hitNo description
SuperFamilySSF473701.83E-18252364IPR001487Bromodomain
SMARTSM002973.9E-23256366IPR001487Bromodomain
Gene3DG3DSA:1.20.920.104.5E-18258364IPR001487Bromodomain
CDDcd043696.56E-17267361No hitNo description
PfamPF004391.0E-12269350IPR001487Bromodomain
PROSITE profilePS5001412.954275347IPR001487Bromodomain
Gene3DG3DSA:1.20.920.104.5E-18410432IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MTKEEAAAAS YSMNDDNDYI CSDDDHNIRD NNTKPKHESQ AWGTWEELLL ACAVKRHGFC  60
DWDSVAAEVR TRTSTSSPVF ISPDICRLKY RDLNRRFKEP AAAEEEEGGN DIPWLEELRS  120
LRVAELRREY DVSILSLQLK VKRLEEERDG GEKLDLEEEE RKGERSENDG GEKAVSTAEE  180
SDRENRSMNE SNSTGAGEKT VGGRDEPSGT HGDDLDPDPV NTAEEGSEAS QSGELGESGT  240
SGRKWKRKRR KDGDGEIRSA ASKSQPLIRL LDLIRSHPRG SLFERRVRSQ ETEEYKSLVK  300
QHLDIETIQR KLKQGSYDDS SSLTFYRDLQ LLFTNAITFF PSSSSESMAA RELRAIVSEE  360
MRKESGKSSP RLLKASGAIM TSSIKADAAE TSEQKSSAPL VVCKRRRFAS AKAKASSPSS  420
SSFSQKEETK EETISEENEN VGTGGGRGSK RTANNTKTGK GKNKEKQTEA KTEKKVVASS  480
DKKKSVADFL KRIKKSSPQK EDKDQNKSKR ESKPKPRELR SNNVGKGRKK AEVENTTTPA  540
KRAPGRPPQK KTVEATATAS GKRGRESGST GKDNKQPKKR SRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242250RKWKRKRRK
2242251RKWKRKRRKD
3245250KRKRRK
4246251RKRRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143023.10.0PREDICTED: serine/threonine-protein kinase PRP4 homolog
TrEMBLA0A397ZD380.0A0A397ZD38_BRACM; Uncharacterized protein
STRINGBo4g021680.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-140DNA-binding bromodomain-containing protein