PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6067_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 176aa    MW: 19381.7 Da    PI: 7.8082
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6067_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-183282155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++++GVr +  +g+Wv+eIr+p   gk+ r++lg+f t+e+Aa+a++ a+++++g
  RrC6067_p1 32 PHFRGVRKRQ-WGKWVSEIREP---GKKSRIWLGTFATPEMAARAHDVAALAIKG 82
                689****888.**********8...557**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-333292No hitNo description
PfamPF008478.9E-133282IPR001471AP2/ERF domain
PROSITE profilePS5103222.6163390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-313391IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-213391IPR016177DNA-binding domain
SMARTSM003801.3E-383396IPR001471AP2/ERF domain
PRINTSPR003674.4E-103445IPR001471AP2/ERF domain
PRINTSPR003674.4E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MQDSSLPRSP APERTGKNSK TKNEQNSVSK HPHFRGVRKR QWGKWVSEIR EPGKKSRIWL  60
GTFATPEMAA RAHDVAALAI KGVSAHLNFP ELASHLPRPA SADPKDIQAA ATAAALEWKP  120
PESPSSTASS SVTSSSVVAD DAFCDLPDLS LDVNDHKVDG FWDSFPYEEP FFMKHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162990163ATERF1
3gcc_A2e-162990163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450005.11e-108PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ9SUK86e-83ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLA0A398AQD92e-90A0A398AQD9_BRACM; Uncharacterized protein
TrEMBLM4FG652e-90M4FG65_BRARP; Uncharacterized protein
STRINGBra040092.1-P4e-91(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.12e-80ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]