PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC604_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LBD | ||||||||
Protein Properties | Length: 177aa MW: 19568.3 Da PI: 6.7363 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 60.8 | 3.7e-19 | 7 | 93 | 1 | 76 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkal..........peeeredamsslvyeAearardPvyGa 76 +C aCk+lrrkC+++Cv+apyf+ e+ +++fa++hk+FGasn +kl+++ p +r ++s +++ A + P +++ RrC604_p1 7 PCGACKFLRRKCVEGCVFAPYFCYEEgSSNFAAIHKVFGASNFSKLISNPlfmtavkpyePSLTRLSLVSMILFTAASPKSSPSSNS 93 7***********************9979*****************987643333333332222256666666666666666666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.839 | 6 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-17 | 7 | 91 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MGGLGSPCGA CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISNPLFMT 60 AVKPYEPSLT RLSLVSMILF TAASPKSSPS SNSLQAQVVL LREEASRKFP REDCMEQGKV 120 LGQDMPQDLH SWFHQVVSDS NLNQMSDVAS TSMVRNESFC SSSESLYYPE AMFPWSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-18 | 3 | 120 | 7 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-18 | 3 | 120 | 7 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473850 | 1e-118 | AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438632.1 | 2e-93 | PREDICTED: LOB domain-containing protein 14-like | ||||
Swissprot | Q9SJW5 | 1e-66 | LBD14_ARATH; LOB domain-containing protein 14 | ||||
TrEMBL | A0A078FFC4 | 2e-89 | A0A078FFC4_BRANA; BnaA05g11430D protein | ||||
TrEMBL | A0A291LR54 | 2e-89 | A0A291LR54_BRARR; Transcription factor LBD14 | ||||
STRING | Bra018260.1-P | 5e-88 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31310.1 | 6e-67 | LOB domain-containing protein 14 |
Publications ? help Back to Top | |||
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