PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC603_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 77aa    MW: 8817.79 Da    PI: 7.6941
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC603_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.2e-10751345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT +E +l+ +a + +  +   +W+ +ar +g g+++++++ ++ 
        RrC603_p1  7 SWTRQENKLFERALAIYDQDtpdRWHNVARAVG-GKSAEEVRRHYE 51
                     6******************9*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.729358IPR017884SANT domain
SMARTSM007175.5E-10456IPR001005SANT/Myb domain
PfamPF002492.3E-8751IPR001005SANT/Myb domain
CDDcd001673.28E-8754No hitNo description
Gene3DG3DSA:1.10.10.602.7E-6760IPR009057Homeodomain-like
SuperFamilySSF466898.22E-14761IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MASSNASWTR QENKLFERAL AIYDQDTPDR WHNVARAVGG KSAEEVRRHY ELLIKDVKDI  60
ESGRSSETNM APKPETK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-25164167RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895494e-70AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481512.11e-39PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN01e-34RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLR0GTL02e-36R0GTL0_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006282757.14e-37(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.15e-31RAD-like 6