PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6027_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 391aa    MW: 44597.7 Da    PI: 7.8813
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6027_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix811.6e-25272354185
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                 rW+++ev+aLi+ r+e+ee+ +    k++ W+e+s++mr +g+ers+k+Ckekwen+nk+yk++ e++kk+ +e+++t +yf++l
  RrC6027_p1 272 RWPQEEVQALIASRSEVEEKTGVV-HKGAIWDEISARMRVKGYERSAKKCKEKWENMNKYYKRVMESSKKQ-PEHTKTRSYFEKL 354
                 8********************998.89******************************************95.9**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.5E-4269330IPR001005SANT/Myb domain
SuperFamilySSF466891.32E-5271357IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-5271328IPR009057Homeodomain-like
CDDcd122033.73E-22271334No hitNo description
PfamPF138371.1E-18271354No hitNo description
PROSITE profilePS500907.468272328IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MELLAGSCRK RLGDDFAEDA DPFGGSDWAY AGRSMRSQGG NDDALAALAD LAPPPQKLKP  60
IRCVVNKSPL VAEDRHPLDI LAGSLDRLPE MGFLEDGCFD APSGSKIADV EESGQLMTRG  120
VGKGGLETEF LDFEDSIDSE EDSSQGVGKA VTGKRKRQTR EKLEHFMEKL VGTMMKRQEQ  180
MHNQLINVME KIERERVRSE EAWRQQEMER MKENEEARKQ EMSRSSSLIS FIKSVIGEEI  240
KIAQPLQTIS NNRCEWDQTQ GEVTLVFPSG RRWPQEEVQA LIASRSEVEE KTGVVHKGAI  300
WDEISARMRV KGYERSAKKC KEKWENMNKY YKRVMESSKK QPEHTKTRSY FEKLGNFYKT  360
NSFRRLEIKT KTLVMRILLK AMGDEKRSSV A
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834951e-123AC183495.1 Brassica oleracea Contig A, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439537.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLQ2A9Q80.0Q2A9Q8_BRAOL; DNA-binding protein-related
STRINGBo2g133550.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-142Trihelix family protein