PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6013_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

BES1

Protein Properties

Length: 295aa MW: 31722.3 Da PI: 8.4856

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6013_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	185	3.2e-57	2	130	1	125
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssas...aspesslq 95 ++++r+ptw+ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg++++ e++e++gs s +sp ss+ RrC6013_p2 2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEPDGTTYRKGCSRPvERMEIGGSPCSsnfMSPASSSF 100 5899********************************************************************999**999754433588888888 PP DUF822 96 sslkssalaspvesysaspksssfpspssl 125 +l+s +s ++ + ++ss+ ++ss+ RrC6013_p2 101 ANLTSGDGQSLIPWLKHLSTTSSSSASSSS 130 899999999988866554444444333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.8E-52	3	130	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG 60 WIVEPDGTTY RKGCSRPVER MEIGGSPCSS NFMSPASSSF ANLTSGDGQS LIPWLKHLST 120 TSSSSASSSS RLPNNYLYIP GGSISAPVTP PLSSPTTSRG LNQINNSFFV SSTPPSPTRH 180 HQTIIPDSEW FSGIQLAQSV PASPTFSLVS QNPFGFKEAG GGGGSRMWTP GQSGTCSPAI 240 QTGDVPMSET VVASPPEFAF GSNANGLVKA WEGERIHEVS GSDDLELTLG NSSTR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	4e-23	6	75	372	441	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	4e-23	6	75	372	441	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	4e-23	6	75	372	441	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	4e-23	6	75	372	441	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018472122.1	0.0	PREDICTED: BES1/BZR1 homolog protein 4-like
Swissprot	Q9ZV88	1e-152	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	A0A3P6APK6	1e-165	A0A3P6APK6_BRACM; Uncharacterized protein
STRING	Bra008378.1-P	1e-165	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1917	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-125	BES1/BZR1 homolog 4