PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6012_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 288aa    MW: 30699.9 Da    PI: 4.9039
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6012_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS31.91.7e-10226280256
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlars 56 
                 ++++le+A+a+++g++e a+++Lar+s++ s+++++ ++l+ +++ AL++r++  
  RrC6012_p1 226 RQTVLEIATAIAEGKTEIASEILARVSQTPSQRRNSEEKLVDFMVTALRSRINPA 280
                 6889************************************************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035145.8E-8226280IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MASGYPGGGG GPEFYGVGGR SMPGGPMNSG NNINPQIPGI FLDQIGNRIS SGNGKRTLAD  60
FQAAQQQQQS FHNQAAINAF LLRSVKPRTF QSPAIDMSSF GGSSQRYVSS PFLPNLRYQQ  120
TQQQSDYMAL TGVVPCIEPV QNLNRVEESS ENMLNSLREL EKQLLDDEGG DDDVSVITHS  180
NSDWLHGLMT PNPNPNPVLS SSSPSSSSSS SSPSTASTTT SAACSRQTVL EIATAIAEGK  240
TEIASEILAR VSQTPSQRRN SEEKLVDFMV TALRSRINPA AAESSAQL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457492.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-79SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A0D3E8K51e-118A0A0D3E8K5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EH051e-118A0A3P6EH05_BRAOL; Uncharacterized protein
STRINGBo9g083130.11e-119(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.13e-71SCARECROW-like 8