PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC595_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRF
Protein Properties Length: 387aa    MW: 42739.9 Da    PI: 6.8297
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC595_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.17.5e-24158202145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+ep+rC+RtDGKkWRCsr v++++k+CErH h++r rsrk++e+
  RrC595_p4 158 DMEPWRCKRTDGKKWRCSRSVVPDHKYCERHAHKSRPRSRKHVES 202
                79****************************************997 PP
2QLQ415.9e-1593127236
        QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                aF+ aQ+q+L++Q  +y y++a++PvPpeLl + +
  RrC595_p4  93 AFSEAQSQELERQRNIYEYIMASLPVPPELLTPFP 127
                8******************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.4E-792128IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166616.38593128IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-993125IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.379158202IPR014977WRC domain
PfamPF088792.8E-19159201IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGTRAERNKE DFVGGGFGFG AVEHSHREVM LPPSHHHYPS YPYYCSAGVT DPVFSSSSTS  60
LAAGSNSAAD PLFTLCSSGE MGRSMSEKEG AAAFSEAQSQ ELERQRNIYE YIMASLPVPP  120
ELLTPFPNHP SNTYHQDVAK GGSLKLGIAS NKSNNAADME PWRCKRTDGK KWRCSRSVVP  180
DHKYCERHAH KSRPRSRKHV ESSSQHNDSR NATSQYAGTY PQFYGQPVNP FSTYSTLPSS  240
NDHHREFRWF MKEDDANANL NPAVGASREL KRGFDYDLNF RQNEPLVDQS FGALEGLFSP  300
SRQETRRFFV EGDQDEAMGS SLTLSMAGGG VEELERRNQH QWVSHEGPQW LCSTAPGGPL  360
AEALFLGASN YPSASTTTTS SCSRSSG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5505435e-67EU550543.1 Arabidopsis thaliana isolate CS6714 GRL8 (GRL8) gene, partial cds.
GenBankEU5505445e-67EU550544.1 Arabidopsis thaliana isolate CS6732 GRL8 (GRL8) gene, partial cds.
GenBankEU5505455e-67EU550545.1 Arabidopsis thaliana isolate CS6751 GRL8 (GRL8) gene, partial cds.
GenBankEU5505465e-67EU550546.1 Arabidopsis thaliana isolate CS6781 GRL8 (GRL8) gene, partial cds.
GenBankEU5505475e-67EU550547.1 Arabidopsis thaliana isolate CS6796 GRL8 (GRL8) gene, partial cds.
GenBankEU5505485e-67EU550548.1 Arabidopsis thaliana isolate CS6797 GRL8 (GRL8) gene, partial cds.
GenBankEU5505495e-67EU550549.1 Arabidopsis thaliana isolate CS6799 GRL8 (GRL8) gene, partial cds.
GenBankEU5505505e-67EU550550.1 Arabidopsis thaliana isolate CS902 GRL8 (GRL8) gene, partial cds.
GenBankEU5505515e-67EU550551.1 Arabidopsis thaliana isolate CS6810 GRL8 (GRL8) gene, partial cds.
GenBankEU5505525e-67EU550552.1 Arabidopsis thaliana isolate CS6824 GRL8 (GRL8) gene, partial cds.
GenBankEU5505535e-67EU550553.1 Arabidopsis thaliana isolate CS6885 GRL8 (GRL8) gene, partial cds.
GenBankEU5505545e-67EU550554.1 Arabidopsis thaliana isolate CS6896 GRL8 (GRL8) gene, partial cds.
GenBankEU5505555e-67EU550555.1 Arabidopsis thaliana isolate CS6922 GRL8 (GRL8) gene, partial cds.
GenBankEU5505565e-67EU550556.1 Arabidopsis thaliana isolate CS906 GRL8 (GRL8) gene, partial cds.
GenBankEU5505575e-67EU550557.1 Arabidopsis thaliana isolate CS931 GRL8 (GRL8) gene, partial cds.
GenBankEU5505585e-67EU550558.1 Arabidopsis thaliana isolate CS1602 GRL8 (GRL8) gene, partial cds.
GenBankEU5505595e-67EU550559.1 Arabidopsis thaliana isolate CS6182 GRL8 (GRL8) gene, partial cds.
GenBankEU5505605e-67EU550560.1 Arabidopsis thaliana isolate CS6603 GRL8 (GRL8) gene, partial cds.
GenBankEU5505615e-67EU550561.1 Arabidopsis thaliana isolate CS6608 GRL8 (GRL8) gene, partial cds.
GenBankEU5505625e-67EU550562.1 Arabidopsis thaliana isolate CS6626 GRL8 (GRL8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469123.10.0PREDICTED: growth-regulating factor 8 isoform X1
SwissprotQ9SU441e-158GRF8_ARATH; Growth-regulating factor 8
TrEMBLA0A0D3A5V00.0A0A0D3A5V0_BRAOL; Uncharacterized protein
STRINGBo1g037590.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78362637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.11e-155growth-regulating factor 8
Publications ? help Back to Top
  1. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]