PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC59229_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 89aa    MW: 10197.4 Da    PI: 10.5837
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC59229_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.89.3e-1211411345
                     HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding 13 vdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     v+a+ + G++ W+ Ia+ ++ gRt++++k++w+
      RrC59229_p1 11 VEAHIRIGNK-WAEIAKLIP-GRTENSIKNHWN 41
                     79********.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.343148IPR017930Myb domain
PfamPF002498.5E-101141IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-91252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-121242IPR009057Homeodomain-like
CDDcd001674.95E-61944No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MDGAKRRESS VEAHIRIGNK WAEIAKLIPG RTENSIKNHW NATKRRQNSK REKKRQANAD  60
NNDGDDLSPA AKRPCILQDY IKSLDNKDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A4e-1412471853MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A4e-1412471853MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14354KRRQNSKREKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472526.15e-44PREDICTED: myb-related protein A-like
SwissprotQ9FIM47e-38MY119_ARATH; Transcription factor MYB119
TrEMBLV4KWZ14e-39V4KWZ1_EUTSA; Uncharacterized protein
STRINGXP_006401032.17e-40(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60522643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-40myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]