PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC586_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CO-like
Protein Properties Length: 390aa    MW: 42889.7 Da    PI: 6.5797
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC586_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box231.7e-0771111439
   zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htv 39 
                 +C++++ ++++  C d ++ lC++C   +H+      H+ 
  RrC586_p4  71 LICERCNAQPASVRCSDERVSLCQNCDWLGHNTganshHKK 111
                68*****************************7688897765 PP
2CCT56.31.1e-19333376144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R++a+ RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ 
  RrC586_p4 333 RNNAVIRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 376
                999**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000210.002324072No hitNo description
PROSITE profilePS501199.11568114IPR000315B-box-type zinc finger
CDDcd000211.66E-572101No hitNo description
PROSITE profilePS5101714.951333375IPR010402CCT domain
PfamPF062031.1E-14333375IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
TQTKTSLLFS SLGKLIRFEN IVVSVSEDTI DGLLSYRSMV HCRSDAACLC LSCDRNVHSA  60
NALSKRHSRT LICERCNAQP ASVRCSDERV SLCQNCDWLG HNTGANSHHK KQTINCYSGC  120
PSSEELASIW SFCLDLDFSE GGGRSACEQG MGLMTIDEGT GEKRTGVQDG NVDQPGTSSA  180
AQRVDRSSVP GSSTLAKGVG VSEDDFCGNL IMDEMDLAFE KYDELFGTAY NSSKDLFEHG  240
GLESLFEKHE GKIMQQQPAE SNAASGDSFM TCRTEPIICF SSQPAHSNIS FSGATGEGND  300
FQDCGVSSSM QQVSREPPPW CPPTAQEISA TTRNNAVIRY KEKKKARKFD KRVRYVSRKE  360
RADVRRRVKG RFVKSGEAYD YDPLSPTRSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477306.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9LUA90.0COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A3P5YXC50.0A0A3P5YXC5_BRACM; Uncharacterized protein
STRINGBo7g089140.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]