PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5809_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 277aa    MW: 31390.1 Da    PI: 4.9151
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5809_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.94e-21137187255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAa+a+++a+ +l+g
  RrC5809_p1 137 HYRGVRQRP-WGKFAAEIRDPNKRG--SRIWLGTFDTAIEAARAYDQAAFRLRG 187
                 8********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-33136196IPR001471AP2/ERF domain
CDDcd000182.36E-32136195No hitNo description
SMARTSM003802.7E-37137201IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-23137197IPR016177DNA-binding domain
PROSITE profilePS5103224.355137195IPR001471AP2/ERF domain
PfamPF008476.7E-15137187IPR001471AP2/ERF domain
PRINTSPR003671.0E-10138149IPR001471AP2/ERF domain
PRINTSPR003671.0E-10161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MANPSEASAL RFIENHLFDE LSPVASDRWM IHESAAATES TSDSSPTIIF GSLEAPFDLS  60
EFENEPEIID LSTPISSSPF EFDFKPSNQT GNQFEPEIQT QSNRKPPLKI SVPAKTEWIQ  120
FNPQPEVTKP IAEEKKHYRG VRQRPWGKFA AEIRDPNKRG SRIWLGTFDT AIEAARAYDQ  180
AAFRLRGSKA ILNFPLEVGK WKTHSDADGE KKRKRDDDEV EDVTVVKKVL NKEQNVKGEE  240
TFPFTKSNLT EMYDWDLTGF LNFPLLSPLS PHPSFSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-30136198163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834930.0AC183493.1 Brassica oleracea Contig B, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609112.11e-166PREDICTED: ethylene-responsive transcription factor 5-like
RefseqXP_013712994.11e-166ethylene-responsive transcription factor 5
SwissprotO803411e-126EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A078GLD81e-164A0A078GLD8_BRANA; BnaC09g20100D protein
TrEMBLA0A0D3E7741e-164A0A0D3E774_BRAOL; Uncharacterized protein
STRINGBo9g069410.11e-165(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-100ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]