PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC5789_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GRF

Protein Properties

Length: 279aa MW: 31507.6 Da PI: 8.2269

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5789_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.5	1.2e-23	80	123	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++ +++k+CE+H+hrg++r +k+ + RrC5789_p1 80 DPEPGRCRRTDGKKWRCSREAHPDSKYCEKHMHRGKNRAKKTLD 123 79**************************************9876 PP
2	QLQ	64.8	2.1e-22	15	50	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+q+L++Q+l+yKy+++++PvPpeL++ i++ RrC5789_p1 15 PFTPTQWQELEHQALIYKYMVSGVPVPPELIFSIRR 50 9*******************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.9E-14	14	50	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	8.2E-17	15	49	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.927	15	50	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.484	80	124	IPR014977	WRC domain
Pfam	PF08879	7.7E-20	81	121	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MNQSGTNGRT TYRPPFTPTQ WQELEHQALI YKYMVSGVPV PPELIFSIRR SLDSSLVSRL 60 IPHQSIGWGS YQMGFGTKTD PEPGRCRRTD GKKWRCSREA HPDSKYCEKH MHRGKNRAKK 120 TLDQNQTTAP LTSPSLSFPN KDSPISPTLS SSSSSPFIDL YSRFGVGSSN SYPYPSSPKQ 180 QQTLQHASAL SLHQNTPTSH FNDLASETDQ KDFRTVLTNT SRQSDQNQEE EEKDSSETKK 240 SIHHFFGEDW AQNKNSSDCW LDLSSQSRLD TGNLQSDPC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269\|PubMed:15326298, ECO:0000269\|PubMed:15960617}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN180301	0.0	JN180301.1 Brassica rapa subsp. pekinensis growth-regulating factor 5 (GRF5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018490328.1	1e-131	PREDICTED: growth-regulating factor 5-like
Swissprot	Q8L8A6	3e-97	GRF5_ARATH; Growth-regulating factor 5
TrEMBL	A0A0D3BB73	1e-127	A0A0D3BB73_BRAOL; Uncharacterized protein
STRING	Bo3g065850.1	1e-128	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4567	26	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-80	growth-regulating factor 5