PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5770_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 339aa    MW: 37970.8 Da    PI: 9.6263
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5770_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.88.8e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT++E+  l+ +v ++G+g W+tI +        k R+  ++k++w++
       RrC5770_p2  5 KQKWTAQEETALKAGVLKHGTGKWRTILSDPEftsilKSRSNVDLKDKWRN 55
                     79***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.347161IPR017930Myb domain
SuperFamilySSF466895.15E-15259IPR009057Homeodomain-like
SMARTSM007177.0E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-13456IPR009057Homeodomain-like
PfamPF002491.4E-7555IPR001005SANT/Myb domain
CDDcd116603.22E-18656No hitNo description
SMARTSM005264.5E-7109181IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150414.485118186IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.95E-9120190IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005385.9E-5121179IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.1E-7121190IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGAPKQKWTA QEETALKAGV LKHGTGKWRT ILSDPEFTSI LKSRSNVDLK DKWRNISVTA  60
MYGSRKKAKL ALKKITSSHD DDSATTALTI VALANGHISS PPVSCLPPPP LQPDFEGLFT  120
SVDELILEAI TNFKRHLGPD GKSILLYVEE KHNMQPDMKR LVTSRLKHLV NVGTIVKIKH  180
RYRICRNGAE QSSPQLFLEG NKENGVQQHL TQYQADGELF MIKGMTAQEA AAAAARAVAE  240
AEFAISEAEE AAREADEAEA EAEAAHIFAK AAIKALKYRM QFEERAIYTF HQLSLLLVPK  300
KEKRDTVKRS LAPQQLMEFI GFLRKHIYIY MLYLSNIDK
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471448.11e-154PREDICTED: telomere repeat-binding factor 3
SwissprotQ9M2X31e-105TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBLA0A0D3A9K21e-151A0A0D3A9K2_BRAOL; Uncharacterized protein
STRINGBo1g081300.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38092759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.12e-95telomere repeat binding factor 3
Publications ? help Back to Top
  1. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]