PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5744_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 214aa    MW: 24407.2 Da    PI: 6.6071
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5744_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.7e-1498142347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++ E++l++ + k++G+g+W++I+r +  +Rt+ q+ s+ qky
       RrC5744_p3  98 PWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 142
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.332157IPR017930Myb domain
SMARTSM007173.0E-7455IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-11661IPR009057Homeodomain-like
CDDcd001673.27E-5853No hitNo description
PROSITE profilePS5129417.70791147IPR017930Myb domain
SuperFamilySSF466891.2E-1593148IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-1694146IPR006447Myb domain, plants
SMARTSM007177.7E-1195145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-1097141IPR009057Homeodomain-like
PfamPF002493.3E-1298142IPR001005SANT/Myb domain
CDDcd001671.94E-998143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDMATNQWTR SEDKMFEQAL VLFPEGSPNR WEIIADQLQK SSGEVKEHYE ALVHDVIEIE  60
SGRVHVPYYI DDSAGWDTAG QVTFGCKHGE NERKRGTPWS ESEHKLFLVG LKRYGKGDWR  120
SISRNVVVTR TPTQVASHAQ KYFLRQNSVK KERKRSSIHD ITTVDTGLAM PGSNMDWNRQ  180
EGSPVQPQQQ QHIMSEFGQQ TTPGGHFEDL GFGM
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893885e-81AC189388.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB053D06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444158.11e-151PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-54DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D3EHV41e-130A0A0D3EHV4_BRAOL; Uncharacterized protein
STRINGBo9g178980.11e-131(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-120MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]