PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5674_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 100aa    MW: 11322.6 Da    PI: 9.0913
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5674_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.6e-101257245
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     g+WT+ E + + +a + +  +   +W+ +a+ +g g+t +++k ++ 
       RrC5674_p2 12 GSWTAKENKAFEQALATYDQDtpnRWHDVAQVVG-GKTTEEVKRHYE 57
                     89*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.175964IPR017884SANT domain
Gene3DG3DSA:1.10.10.605.0E-61058IPR009057Homeodomain-like
SMARTSM007171.2E-91062IPR001005SANT/Myb domain
PfamPF002491.3E-81257IPR001005SANT/Myb domain
SuperFamilySSF466892.92E-131367IPR009057Homeodomain-like
CDDcd001673.10E-81460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MAASSVSSHS SGSWTAKENK AFEQALATYD QDTPNRWHDV AQVVGGKTTE EVKRHYELLV  60
QDINSIENGL VPFPNYNTNG RGRFRNKRGI YCRPTFLTFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-31686289RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895211e-108AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence.
GenBankAC1896351e-108AC189635.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004J05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107919.11e-45PREDICTED: protein RADIALIS-like 1
RefseqXP_013640791.11e-45protein RADIALIS-like 1
RefseqXP_013687135.11e-45protein RADIALIS-like 1
SwissprotF4JVB81e-40RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A398ANA93e-44A0A398ANA9_BRACM; Uncharacterized protein
STRINGBra011870.1-P1e-44(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.16e-42RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]