PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC565_p8
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 350aa    MW: 39733.1 Da    PI: 6.8703
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC565_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569e-1883128148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+++eE++ ++++++ lG++ W+tIa+ ++ gRt++++k++w+++l
        RrC565_p8  83 RGRFSPEEEQTILNLHAVLGNK-WSTIANNLP-GRTDNEIKNFWNTHL 128
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.401977IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.8E-71080IPR009057Homeodomain-like
SMARTSM00717631379IPR001005SANT/Myb domain
SuperFamilySSF466895.13E-2263136IPR009057Homeodomain-like
PROSITE profilePS5129426.46678132IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-2881133IPR009057Homeodomain-like
SMARTSM007173.7E-1682130IPR001005SANT/Myb domain
PfamPF002498.3E-1683128IPR001005SANT/Myb domain
CDDcd001673.47E-1285128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MRRSLCGDDS GLKKGPWTLK KMRNLSTMSK NMAIVAGQLF PSVLVPDLFL LLLFYSFSCD  60
CLNRCGKSCR LRWTNYLRPD IKRGRFSPEE EQTILNLHAV LGNKWSTIAN NLPGRTDNEI  120
KNFWNTHLKK KMIQMGIDPM THRPRPDVFS SLSQLVSMSS NLRDFVDMQL QFQTDQEQTI  180
LKLQTEMAKL KLFQYLLQPP SMNNNINPND LDTLSLFNSI ASFKETNTTS NNLDHGSYLQ  240
DFNSIPSLIG PSSTFPQHLE DNHFKFFTQR ENLPVSPVWL SDPSSSNQSS VPSLDPSSAV  300
SDDDLIRNRY IIEDVNSNLM TSSIRQESGA SASAVWPDHL LDDSIFSNIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-206413240108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553420.0AC155342.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH052O08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474965.10.0PREDICTED: myb-related protein 315-like
SwissprotQ9SBF31e-164MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A3P5ZSR80.0A0A3P5ZSR8_BRACM; Uncharacterized protein
STRINGBra006055.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.11e-145myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]