PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5522_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 531aa    MW: 57220.1 Da    PI: 6.67
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5522_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.4e-30214273159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+H h+
  RrC5522_p1 214 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCADDMSILITTYEGTHSHP 273
                 58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31199275IPR003657WRKY domain
SuperFamilySSF1182901.57E-27207275IPR003657WRKY domain
PROSITE profilePS5081128.69209275IPR003657WRKY domain
SMARTSM007749.3E-37214274IPR003657WRKY domain
PfamPF031064.4E-27215273IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MTQHQMNPPA PQIETSAKQL IRYEGDDDHQ ELESAKAEMS EVKEENEKLK GMLERIESDY  60
KSLKLRFFDI VQQEASNNPT QDQNMVGLQK ATMDLSSCDQ EHELVSLSLG RSASRSDNTS  120
KKEDKSDAIS KEVNANEELT KAGLTLGFSN GSLSSQENSS EEAPGETLPP GKVTGKRSSP  180
APDSGGDVEG EAGQQNHVKR ARVCVRARCD TPTMNDGCQW RKYGQKIAKG NPCPRAYYRC  240
TVAPGCPVRK QVQRCADDMS ILITTYEGTH SHPLPLSATT MASTTSAAAS MLLSGSSSSS  300
SSSAAEMIGN NLYDNSRFIN NNKSFYSPTL HSPLHPTVTL DLTAPQHSSS SSLPSLNFNK  360
FSNSFQKFPS TSLNFSSNPS SSSTTLNIPA IWSSGYSSYT PYPYNNVQFG TSNLGKTVQN  420
SQSLTETLTK ALTSDPSFQT VIAAAISSMV GSNGEKQIVH PISNNVQQTA AKNNIKGCGG  480
YFSSLLMSNI IANNQTGASS DQPSSQLPLS MFKNSSSSSS TTSFVNKEEK S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21201275174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0121710.0FJ012171.1 Brassica napus WRKY72 transcription factor (WRKY72) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473567.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLV9LYL30.0V9LYL3_BRANA; WRKY transcription factor 72.1
STRINGBra006283.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.10.0WRKY DNA-binding protein 72