PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC5502_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 199aa MW: 22686.6 Da PI: 9.0604 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 38 | 81 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++++Ed+l+++++++lG++ W++Ia +++ gRt+++++ +w +yl RrC5502_p1 38 NFSKDEDDLFLKLHALLGNR-WSLIAGRLP-GRTDNEVRIHWETYL 81 79******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.15E-15 | 19 | 91 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 28 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.377 | 31 | 85 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-15 | 35 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.95E-12 | 38 | 81 | No hit | No description |
Pfam | PF00249 | 7.2E-15 | 38 | 81 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MNKIRHHALS RPSGMIHRAK RYRIRGRKYA KPELKQSNFS KDEDDLFLKL HALLGNRWSL 60 IAGRLPGRTD NEVRIHWETY LEKKLMKMGI DPTNHRLYHH TNYTSRQYIN SSHKEHETDI 120 ISDQSSSVSE SCDDMSLLPV SRTICSEDNA SAGHNWLPDL NIGLVPMKTV NSLPGGSLQE 180 PSESSNHGSA SQETLLLFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-12 | 19 | 85 | 42 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN379107 | 0.0 | JN379107.1 Brassica oleracea var. acephala myb-like transcription factor 2 (MYBL2-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018453467.1 | 1e-147 | PREDICTED: myb-related protein 308 | ||||
TrEMBL | A0A397YSN5 | 1e-117 | A0A397YSN5_BRACM; Uncharacterized protein | ||||
STRING | Bo6g112670.1 | 1e-115 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71030.1 | 3e-88 | MYB-like 2 |