PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC548_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 1060aa MW: 119588 Da PI: 7.7143

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC548_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29	2.4e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e+++++ +++G++ Wk++a+ ++ R+++++ RrC548_p3 46 QWSKEELERFYEGYRKFGKE-WKKVAAFVN-SRSAEMV 81 6*****************.*****.*9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.382	42	93	IPR017884	SANT domain
SuperFamily	SSF46689	3.81E-10	42	92	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-5	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	4.0E-8	46	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-5	46	82	IPR009057	Homeodomain-like
CDD	cd00167	8.66E-6	47	89	No hit	No description
SMART	SM01135	3.9E-59	571	672	IPR033471	DIRP domain
Pfam	PF06584	1.3E-29	571	671	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1060 aa Download sequence Send to blast
MAPSRSTKSK YKRTPRPKAV SPHKEEESMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR 60 KFGKEWKKVA AFVNSRSAEM VEALYTMNKA YLSLPEGTAS VVGLTAMMTD HYAVLHGRSD 120 SEQEKNETPR SASKRSKLKS SDHPSAGLEG LSDRLQFRSS SGYLPSLKKR RTETMPRAVG 180 KRTPRIPVSY TPEKDTSERY LSPVKKSLDQ KGDDTDDDME HEIALALTEA SQRGGSTKNP 240 HTPNRNSKMF SPDKKSEIMR SDIDMAIAKL RATDTEDACR EPSLESTEAE NVDNPGSRNE 300 LTNGEDRNAM KGKQYYRRRF GIKEDDSKEA CSGEHMPGIL KYGSISENHE DTACDALQTL 360 ADLSLMMPET ATDTESSVQA EENRAGKAYV SDYKETDPAS MSKRGSLRKS KQKRSVCNDL 420 CNTEPEKKSP SSSVIRKGRQ KSSPAKVPKD ELAEISQVTE PSKNKGIGEE SKPVGRGKRS 480 ASIRNSHEKK SIKPQDRTSS SNNMVEEDES GPSTAATQKE VNLPTKVRSR RKIVTEKPLT 540 IDDVKKSEIL EKFSHCISSF RARRWCLFEW FYSAIDYPWF ARQEFVEYLD HVGLGHVPRL 600 TRVEWGVIRS SLGRPRRFSQ QFLKEEKEKL YLYRDSVRKH YDELNTGIRE GLPMDLARPL 660 NVSQRVICVH PKSREIHDGS VLTVDHCRYR IQFDNPELGV EFVKDTECMP LNPLENMPAS 720 LAKNYVLSKH YSRNSSEEKM HEQLEISSSD PQAQNGVDEA LAVQLFNSQP IGHIHAREAD 780 VQALSELTRA LDKKELVLRE LNYMNNEVVE SEKDGHNALK DSESFKKQYA AVLFQLSEIN 840 EQARVSLALL GLRQRNTYQE NVPSSSITHM SNSGEPDGQL TYVDNYASDT NGFQVSEIVD 900 SSRVKARKMV LRAIQALALL RKDENDVVNI EEAIDFVNNQ LSTDESEGSS VQQTRAFQDQ 960 RLPSTPNPSS STQHADDSHV NPLDQNDLQV PSELVSRCMA TLLMIQRCTE RQFPPSEVAQ 1020 VLDSAVASLQ PCCSQNLPIY TEIQKCMGII RNQILALVPS

Sequence ? help Back to Top

Protein Sequence Length: 1060 aa Download sequence Send to blast

MAPSRSTKSK YKRTPRPKAV SPHKEEESMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR  60
KFGKEWKKVA AFVNSRSAEM VEALYTMNKA YLSLPEGTAS VVGLTAMMTD HYAVLHGRSD  120
SEQEKNETPR SASKRSKLKS SDHPSAGLEG LSDRLQFRSS SGYLPSLKKR RTETMPRAVG  180
KRTPRIPVSY TPEKDTSERY LSPVKKSLDQ KGDDTDDDME HEIALALTEA SQRGGSTKNP  240
HTPNRNSKMF SPDKKSEIMR SDIDMAIAKL RATDTEDACR EPSLESTEAE NVDNPGSRNE  300
LTNGEDRNAM KGKQYYRRRF GIKEDDSKEA CSGEHMPGIL KYGSISENHE DTACDALQTL  360
ADLSLMMPET ATDTESSVQA EENRAGKAYV SDYKETDPAS MSKRGSLRKS KQKRSVCNDL  420
CNTEPEKKSP SSSVIRKGRQ KSSPAKVPKD ELAEISQVTE PSKNKGIGEE SKPVGRGKRS  480
ASIRNSHEKK SIKPQDRTSS SNNMVEEDES GPSTAATQKE VNLPTKVRSR RKIVTEKPLT  540
IDDVKKSEIL EKFSHCISSF RARRWCLFEW FYSAIDYPWF ARQEFVEYLD HVGLGHVPRL  600
TRVEWGVIRS SLGRPRRFSQ QFLKEEKEKL YLYRDSVRKH YDELNTGIRE GLPMDLARPL  660
NVSQRVICVH PKSREIHDGS VLTVDHCRYR IQFDNPELGV EFVKDTECMP LNPLENMPAS  720
LAKNYVLSKH YSRNSSEEKM HEQLEISSSD PQAQNGVDEA LAVQLFNSQP IGHIHAREAD  780
VQALSELTRA LDKKELVLRE LNYMNNEVVE SEKDGHNALK DSESFKKQYA AVLFQLSEIN  840
EQARVSLALL GLRQRNTYQE NVPSSSITHM SNSGEPDGQL TYVDNYASDT NGFQVSEIVD  900
SSRVKARKMV LRAIQALALL RKDENDVVNI EEAIDFVNNQ LSTDESEGSS VQQTRAFQDQ  960
RLPSTPNPSS STQHADDSHV NPLDQNDLQV PSELVSRCMA TLLMIQRCTE RQFPPSEVAQ  1020
VLDSAVASLQ PCCSQNLPIY TEIQKCMGII RNQILALVPS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ583497	0.0	AJ583497.1 Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018492332.1	0.0	PREDICTED: protein ALWAYS EARLY 3
Refseq	XP_018492333.1	0.0	PREDICTED: protein ALWAYS EARLY 3
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	M4ER59	0.0	M4ER59_BRARP; Uncharacterized protein
STRING	Bra031282.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]