PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC5476_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YC

Protein Properties

Length: 299aa MW: 33078.8 Da PI: 4.9001

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5476_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.2	1.9e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++++v+ ++fdfl ++v + RrC5476_p2 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTVSSLHLKNCVETYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.1E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	1.31E-19	4	94	IPR009072	Histone-fold
Pfam	PF00808	2.2E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TVSSLHLKNC VETYNVFDFL REVVSKVPDY GHGHGHGHGN GQADATMDDR TISKRRKPTG 120 DEANDSDEDL KKTKVQETGQ VGPSGRGRGR GRGRGRGRSA KTAERELLQR EMETEPTTIL 180 STPQQLTQDG ITMPAPTTQQ DVEKKDADDM SSHAKQELQS PKAGNDTNSG LGRDFDLNTQ 240 SLDMVETKPP VVVSASGESK PEEYPGWSMS DIGNMDPMQL ASMGKRLDEE EEDYDEEEV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	6e-20	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	156	RGRGRGRGRG
2	147	157	RGRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC818622	1e-97	KC818622.1 Brassica napus transcription factor subunit NF-YC11A (NF-YC11A) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018446284.1	1e-180	PREDICTED: dr1-associated corepressor-like isoform X1
TrEMBL	A0A397XN84	1e-160	A0A397XN84_BRACM; Uncharacterized protein
TrEMBL	M4CYJ8	1e-160	M4CYJ8_BRARP; Uncharacterized protein
STRING	Bra009295.1-P	1e-161	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3506	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-101	nuclear factor Y, subunit C11