PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC546_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Nin-like | ||||||||
Protein Properties | Length: 322aa MW: 37135.6 Da PI: 10.0049 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 80.1 | 2.3e-25 | 193 | 241 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ledlskyF pi +A+++L+v+lTvLK++CR++GI+RWPhRk+ksl RrC546_p3 193 GLCLEDLSKYFGVPIVEASRKLNVGLTVLKKKCREFGIPRWPHRKLKSL 241 5779*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.656 | 176 | 261 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.6E-21 | 194 | 241 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MAHSLTSLSI FQGANHKEMI RSLHVYGSVE IEREFLFQRK SRYVEKKAKP LFCSEGLRRP 60 EISLGSVFGT WRCIFVFRSN HSLPQFPTLL CPSRNPKLVD VPNLANVLKS ISELKPKKPS 120 NVSDIEQCSS RVPYCNVDQP KQQRFVLKQD LNCLPDSETE SEESEDDQTE HSESDVTTEI 180 LKKRRTPSQH VAGLCLEDLS KYFGVPIVEA SRKLNVGLTV LKKKCREFGI PRWPHRKLKS 240 LDSLIHDLQE EAEKQRENNK AAAMVVAKKQ KKLETEMRNI VERPFMEIQI ETKRFRQDNF 300 KKRHRASRAK KNQESLATSS ST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL031135 | 4e-73 | AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project). | |||
GenBank | AL161587 | 4e-73 | AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83. | |||
GenBank | CP002687 | 4e-73 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468396.1 | 0.0 | PREDICTED: protein RKD5 isoform X1 | ||||
Swissprot | O81791 | 1e-171 | RKD5_ARATH; Protein RKD5 | ||||
TrEMBL | A0A0D3A1Q8 | 0.0 | A0A0D3A1Q8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FQR5 | 0.0 | A0A3P6FQR5_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo1g006340.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12049 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 1e-149 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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