PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC546_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WOX

Protein Properties

Length: 263aa MW: 29291.3 Da PI: 6.0384

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC546_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.9	5.5e-21	97	157	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps++++++++++l +++e++V++WFqNrRa+ k+ RrC546_p1 97 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKDITEELsqhgQISEQNVYNWFQNRRARSKR 157 89***************99************************************97 PP
2	Wus_type_Homeobox	103.5	1.4e-33	96	159	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq RrC546_p1 96 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQISEQNVYNWFQNRRARSKRKQ 159 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.933	93	158	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.5E-17	93	160	IPR009057	Homeodomain-like
SMART	SM00389	4.3E-14	95	162	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-17	96	159	IPR009057	Homeodomain-like
CDD	cd00086	4.08E-13	97	159	No hit	No description
Pfam	PF00046	8.0E-19	97	157	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MMEWDNNQQQ QPNNHNSSNL QGIDVSGGGG SSSGGMYVKV MTDEQLETLR KQIAIYATIC 60 ERLVEMHKTL TSHQDLAGVR LGGLYADPTI GHKMTARQRW TPTPVQLQIL ERIFDQGTGT 120 PSKQKIKDIT EELSQHGQIS EQNVYNWFQN RRARSKRKQH GGGVGSSNNN NNNGESEVET 180 ETETLNNGKR KIPESLRVLP DGNNAIGTTS TSPRPEDLCF QSPEMSSDLH FLSNPRDDHL 240 VGKMGLSESY SLYDHVEDYG MSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	158	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY048268	1e-125	AY048268.1 Arabidopsis thaliana AT4g35550/F8D20_60 mRNA, complete cds.
GenBank	AY251404	1e-125	AY251404.1 Arabidopsis thaliana WOX13 protein mRNA, complete cds.
GenBank	BT000538	1e-125	BT000538.1 Arabidopsis thaliana homeodomain - like protein (At4g35550/F8D20_60) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018471650.1	1e-161	PREDICTED: WUSCHEL-related homeobox 13
Swissprot	O81788	1e-135	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A3P6G0Z6	1e-158	A0A3P6G0Z6_BRAOL; Uncharacterized protein
STRING	Bo1g006370.1	1e-146	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4620	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-119	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]