PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC5438_p5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 170aa MW: 18302.4 Da PI: 8.8146 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.6 | 4.7e-14 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L+YPrGA++V+CalC t+ RrC5438_p5 7 CRGCRTTLMYPRGATNVCCALCRTI 31 9**********************97 PP | |||||||
2 | zf-LSD1 | 30.1 | 8.1e-10 | 44 | 67 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C gC+++L+Y+r A+sVRC++C+t RrC5438_p5 44 CCGCGIMLMYTRSATSVRCSCCHT 67 99*********************8 PP | |||||||
3 | zf-LSD1 | 45 | 1.8e-14 | 83 | 107 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr++L+YP+GA+sV+Ca+C+ V RrC5438_p5 83 CGHCRIILMYPYGASSVKCAVCQYV 107 ***********************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.8E-12 | 4 | 31 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.8E-12 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.5E-10 | 42 | 71 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.4E-7 | 44 | 67 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.7E-12 | 81 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.4E-13 | 83 | 107 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 170 aa Download sequence Send to blast |
MQEQLVCRGC RTTLMYPRGA TNVCCALCRT ISPPQGMDMA RIVCCGCGIM LMYTRSATSV 60 RCSCCHTLNL VPAPSNQTAR INCGHCRIIL MYPYGASSVK CAVCQYVTNV NMSNGRAPLS 120 MNRPNLTASP STRVPSTSTT QTVVVENPMS LDESGKLVSN VVVGVTTHKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480681.1 | 1e-117 | PREDICTED: protein LSD1-like | ||||
Swissprot | P94077 | 1e-73 | LSD1_ARATH; Protein LSD1 | ||||
TrEMBL | A0A3P6E0U8 | 1e-104 | A0A3P6E0U8_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g067690.1 | 1e-103 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5345 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20380.7 | 3e-71 | LSD family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|