PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5424_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 235aa    MW: 26035 Da    PI: 7.39
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5424_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001782104123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C+ C+k Fs++  L  H++ H
  RrC5424_p2  82 FACTFCKKEFSTSQALGGHQNAH 104
                 78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.63E-679109No hitNo description
Gene3DG3DSA:3.30.160.603.2E-580108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.1E-681106IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.65582109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MELNLTTPTS CSSSSISSSS HEMGVLTDTK GKTKEKTADG PATETPRLEF SFLFNNDNIR  60
NSGFGVLDEA EGTKNEAKAR VFACTFCKKE FSTSQALGGH QNAHKQERSL AKRRKEIEIN  120
YPGLSFYSQY PPRGVSNSNS SQYDLGVRCS PNIGKYKAYP LNIFRCRLGY RGLNINSHIP  180
LLSQLSCPKT DDLSKNLISN LEGSIHMNKE DQGDKEDQSD SDTCKDTEID LSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469354.11e-174PREDICTED: uncharacterized protein LOC108841069
TrEMBLA0A398AC281e-156A0A398AC28_BRACM; Uncharacterized protein
TrEMBLM4EJE81e-156M4EJE8_BRARP; Uncharacterized protein
STRINGBra028914.1-P1e-157(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.18e-85C2H2 family protein