PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5419_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 169aa    MW: 19116.6 Da    PI: 9.729
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5419_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.6e-1486130347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + ++ G+g+Wk I++ + k Rt  q+ s+ qky
       RrC5419_p2  86 PWTEEEHKLFLLGLQKVGKGDWKGISKNFVKSRTSTQVASHAQKY 130
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.33179135IPR017930Myb domain
SuperFamilySSF466891.65E-1781136IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-1882133IPR006447Myb domain, plants
SMARTSM007174.5E-1083133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-1185130IPR009057Homeodomain-like
PfamPF002491.6E-1186130IPR001005SANT/Myb domain
CDDcd001671.60E-986131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MADGSSSCTS ESTVDGSCIS REIMLFGVRV VLDPMRKSVS LNNLSEYEQT EEIPKIIAED  60
EKNKTYASAD EAVPITSSRE RKRGVPWTEE EHKLFLLGLQ KVGKGDWKGI SKNFVKSRTS  120
TQVASHAQKY FLRRSNLNRR RRRSSLFDMT TDTVNVSSDY KCLSLVGQR
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530761e-74AK353076.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-16-O16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445545.18e-94PREDICTED: transcription factor MYB1R1-like
RefseqXP_018445564.18e-94PREDICTED: transcription factor MYB1R1-like
SwissprotQ2V9B02e-53MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A078I5N46e-76A0A078I5N4_BRANA; BnaA07g31770D protein
TrEMBLA0A078JYA35e-76A0A078JYA3_BRANA; BnaCnng78680D protein (Fragment)
TrEMBLA0A0D3D0Q65e-76A0A0D3D0Q6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GE645e-76A0A3P6GE64_BRAOL; Uncharacterized protein
STRINGBo6g119010.19e-77(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.23e-69MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]