PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5417_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 303aa    MW: 34152.6 Da    PI: 9.2283
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5417_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-1064112348
                      SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 
                       WT eE +++ +a +    +    +W++Ia+ ++ g+t ++++ r+ k+l
       RrC5417_p2  64 VWTVEENKRFEKALAFIDDKedveSWSKIAALIP-GKTVYDVIKRYKKLL 112
                      6*****************99**************.************986 PP
2Myb_DNA-binding49.68.9e-16184228347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky
       RrC5417_p2 184 PWTEEEHRRFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 228
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-558113IPR009057Homeodomain-like
SuperFamilySSF466893.01E-959118IPR009057Homeodomain-like
SMARTSM007173.0E-661114IPR001005SANT/Myb domain
PfamPF002495.3E-864112IPR001005SANT/Myb domain
PROSITE profilePS500906.37765112IPR017877Myb-like domain
CDDcd001671.86E-765112No hitNo description
PROSITE profilePS5129422.32177233IPR017930Myb domain
SuperFamilySSF466892.0E-17179232IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-18180232IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.4E-13181228IPR009057Homeodomain-like
SMARTSM007171.9E-13181231IPR001005SANT/Myb domain
PfamPF002496.5E-13184228IPR001005SANT/Myb domain
CDDcd001673.61E-11184229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
ETPKQSIKKP LILFFSLTIV LCSSRFSFKK RRAHLAMSST NGGGFKCFSP ENTNWIFQEV  60
KDVVWTVEEN KRFEKALAFI DDKEDVESWS KIAALIPGKT VYDVIKRYKK LLDDVSDIEA  120
GLVPDPRYGY DASSETTCDY FFGLENSGCG YGYDYVVGGK RSTPAMTDGF GAPIPEKERK  180
KGVPWTEEEH RRFLMGLKKY GKGDWRNIAR NFVTTRTPTQ VASHAQKYFI RQLTDCKDKR  240
RSSIHDITTV NVPDANASTT TTPAAATVSP TPANPFDVFL PKPHHSFAFS PASSYHNAFP  300
QWS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458248.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-70DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV4LJX81e-154V4LJX8_EUTSA; Uncharacterized protein
STRINGXP_006398645.11e-154(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148841619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.11e-123MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]