PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5406_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 266aa    MW: 29976.8 Da    PI: 8.9735
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5406_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.95.8e-142171155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +++ GVr+++ +g+WvAeI+  +   ++ r +lg+f taeeAa a ++a+  l+g
  RrC5406_p2 21 TKFVGVRQRP-SGKWVAEIKGTT---QQIRMWLGTFETAEEAAPANDEAACLLRG 71
                699*******.7******77621...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-102171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-252280IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-162279IPR016177DNA-binding domain
PROSITE profilePS5103217.822279IPR001471AP2/ERF domain
SMARTSM003807.5E-322285IPR001471AP2/ERF domain
PRINTSPR003672.1E-72334IPR001471AP2/ERF domain
CDDcd000184.75E-272381No hitNo description
PRINTSPR003672.1E-74561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDHQTTQKPK TKKKSRSTKK TKFVGVRQRP SGKWVAEIKG TTQQIRMWLG TFETAEEAAP  60
ANDEAACLLR GSNTRTNFAN HFPNNSHLSL KIRNLLHQKQ SMKQQQQQLQ QNKPLSSFAE  120
HNINYNSPAT SPTATTTTTT TLMPLNNVYF PISSAILQPE ADSVQLPYSW PLVSELNHQV  180
PLTQGVTEAH VHLNSYNLTD QHLGLAEIER QISASLYAMH GATTYYNNMN AEYPIFDPTD  240
LIWDLPSLSQ LFCPTLISSY ISFSLQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474271.11e-154PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotQ6J9S11e-120RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLM4CQM91e-134M4CQM9_BRARP; Uncharacterized protein
STRINGBra006518.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75262641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-95related to AP2 11
Publications ? help Back to Top
  1. Meng S, et al.
    Arabidopsis NRT1.5 Mediates the Suppression of Nitrate Starvation-Induced Leaf Senescence by Modulating Foliar Potassium Level.
    Mol Plant, 2016. 9(3): p. 461-470
    [PMID:26732494]