PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC5396_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 262aa MW: 28894.9 Da PI: 9.5555

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5396_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.4	2.5e-30	119	204	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk++eg+ +r ++ +++++f+qlea RrC5396_p2 119 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTREGKAGR--QDGKHYRFFRQLEA 204 8***********************************999*************************98..55667*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.98	118	177	IPR017877	Myb-like domain
Pfam	PF13837	1.0E-20	119	205	No hit	No description
CDD	cd12203	4.24E-23	119	184	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MDDHHPQYGV PELRQLMQGG GRTTTTESPS TSSHFPSEFF GFNLAPAAPQ HHRLHQFTTD 60 QEMAILPRGI HGLGGGSSTA GNNSNLNANS SGGAVGFSGF LEGGGFGGGG GGDAGGTGRW 120 PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY 180 KKTREGKAGR QDGKHYRFFR QLEALYGDSN NLVPCPSHNT QFMSNALLGF HTQNVMNVTT 240 TTSNIHNVDS RAWFSSSKPK PF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018444892.1	0.0	PREDICTED: trihelix transcription factor PTL-like
Refseq	XP_018444899.1	0.0	PREDICTED: trihelix transcription factor PTL-like
Swissprot	Q9LZS0	1e-134	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	V4LKD8	1e-138	V4LKD8_EUTSA; Uncharacterized protein
STRING	XP_006398825.1	1e-139	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-111	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]