PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5396_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 313aa    MW: 35933.1 Da    PI: 5.8704
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5396_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.85.8e-18150228179
    trihelix   1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstc 79 
                 +W +qe+ +L+e+r++me+++++   g++++ lWeevs km++ gf ++s+  Ckekwe++++  kki++ +k++    ss+c
  RrC5396_p1 150 CWNEQEIIKLMEIRTSMESAFQEilgGCSDAFLWEEVSGKMSQLGFdQKSALLCKEKWEWISNGKKKITKKRKEK----SSSC 228
                 7*********************98889*******************778***************99999999885....3333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-12149231No hitNo description
CDDcd122035.35E-15149213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MTSSSEGNDS SSRRKKRSWK NKIKEFIDMN MKRLIERQDV WLEKLTKVIE DKEEQRMMKE  60
EEWRKSEAAR IDKEHLFWSK ERERMEARDV AVIEALQFLT GKTLVKPLCS SPEERINGTN  120
EIQNKSEDQN ENESDQTMTN NVSVERSGSC WNEQEIIKLM EIRTSMESAF QEILGGCSDA  180
FLWEEVSGKM SQLGFDQKSA LLCKEKWEWI SNGKKKITKK RKEKSSSCGV YYPKTEENTI  240
YNNQASGYNA NDQHHPMNER AVGSSTSTAN AAAGNPSGAM AASTNCFPFF MGDGDQNLWE  300
SYGLRLNKGE NHQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444892.10.0PREDICTED: trihelix transcription factor PTL-like
RefseqXP_018444899.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS01e-177PTL_ARATH; Trihelix transcription factor PTL
TrEMBLM4EJ580.0M4EJ58_BRARP; Uncharacterized protein
STRINGBra028824.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-143Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]