PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC538_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 425aa    MW: 47472.2 Da    PI: 4.918
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC538_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-172269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed+ll+ +v ++G g+W+++ ++ g+ R++k+c++rw ++l
        RrC538_p1 22 KGPWTSAEDQLLIAYVDKHGDGNWNAVQKHSGLSRCGKSCRLRWVNHL 69
                     79*******************************************996 PP
2Myb_DNA-binding43.86e-1475118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T  E+++ +++++ +G++ W++ a++++ gRt++++k++w++
        RrC538_p1  75 KGSFTDKEEQRVIELHASMGNK-WARMAAELP-GRTDNEIKNFWNT 118
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.5971773IPR017930Myb domain
SuperFamilySSF466891.95E-2819116IPR009057Homeodomain-like
SMARTSM007175.7E-152171IPR001005SANT/Myb domain
PfamPF002493.8E-162269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-242376IPR009057Homeodomain-like
CDDcd001677.78E-122469No hitNo description
PROSITE profilePS5129418.74474124IPR017930Myb domain
SMARTSM007177.3E-1474122IPR001005SANT/Myb domain
PfamPF002496.3E-1375118IPR001005SANT/Myb domain
CDDcd001671.05E-977118No hitNo description
Gene3DG3DSA:1.10.10.605.3E-2477122IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MGKVRHDSGS GDDFAIDKNF HKGPWTSAED QLLIAYVDKH GDGNWNAVQK HSGLSRCGKS  60
CRLRWVNHLR PDLKKGSFTD KEEQRVIELH ASMGNKWARM AAELPGRTDN EIKNFWNTRV  120
KRLQRLGLPI YPDEVREQAL NAAAQNGHNT DSLDGHHSQE SLELDCLEIP EFDFKYLQLN  180
GCSSFYQSLL SSVPTGNQMR QNPALFQPNN IYNVIDSSYQ PPPNRKRIRE PETAFPPYNG  240
GYAVSDQVWN YPSTPGQFNL AAPDSHFLGD ATTTTTTYSS PSEPLLHGGA EKLELPSFQC  300
FDTQDEPGDW ETQHPMQALE SDNTLVMSPL TSDCPSSFCD GLLESVVYGS SGEKQTDPDS  360
PLLHQSSLLD HIEITPATAN TAGHNSNAET DLVHFGPTSS NERRTSFESG DWIRQLLGED  420
RDYTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30221227106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00279DAPTransfer from AT2G26960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0765520.0KR076552.1 Brassica napus MYB transcription factor 81-2 (MYB81-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473428.10.0PREDICTED: transcription factor MYB104-like isoform X2
TrEMBLA0A397ZZ370.0A0A397ZZ37_BRACM; Uncharacterized protein
STRINGBra000531.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.11e-159myb domain protein 81