PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5382_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 386aa    MW: 43806.4 Da    PI: 5.6628
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5382_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.4e-10337383246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                      + W  eE e l ++vk++G+  Wk I +  +     Rt+ ++k++w++
       RrC5382_p2 337 NFWRLEEVEALREGVKKHGTS-WKYIKSLNPlvfAERTEVDLKDKWRN 383
                      67*****************99.************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.227331386IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-11332384IPR009057Homeodomain-like
SuperFamilySSF466893.02E-12332385IPR009057Homeodomain-like
CDDcd116601.28E-14339386No hitNo description
PfamPF002492.7E-6339384IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MVEMEVIDKW VAEFFIRRKT NPRVSPTNLL STLKLGDSLD DCSNLKLKKA SVLRQISDSL  60
IRGDVDEETL DLLETLEKLL LQGEGSVLTE SHKSAYCWTA VECTAMFMWP LSASEGLYED  120
ALERIWTKRI GGLKESGKSG LVVSGEVLRW EDDLRKAVED AEVYRRIRES NVRYTAVCFL  180
NQLLEEQWAV LGSSSLESVA QRLLLFERGD GGGGGDDRDV HGVENDEQHG AEEEERTQED  240
ERSVDKGDKV AARDLKDYLL EIQRQIDPSS SARQVAEPNT PQPSRVNRAG TSGQQQDNAS  300
ERSSSRVRPR LPTPVPLNVS PLNKKKKASP LPRRKKNFWR LEEVEALREG VKKHGTSWKY  360
IKSLNPLVFA ERTEVDLKDK WRNMNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485553.10.0PREDICTED: uncharacterized protein LOC108856281
TrEMBLM4FEE91e-177M4FEE9_BRARP; Uncharacterized protein
STRINGBra039470.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-101TRF-like 5