PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5379_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 364aa    MW: 40583.2 Da    PI: 6.9705
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5379_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.4e-09171218455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  RrC5379_p3 171 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 218
                 8*************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.06E-9165222No hitNo description
SuperFamilySSF474591.96E-15165236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.684167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-15167235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6171218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDLTGGFGAR YDGGQEATGL ESLHLGDELR QLPPDGFTAL LELPPTQALE LLHFTDSPSS  60
SPQAAPIAPP QPLHSYRTLT FPSNLALMER PARFSTEHQQ NGNNLSGETT TSSSVKTEPA  120
ETNSSSQAVN NRSGKKAKSS TKKKKKSKSS EEKEKLPYVH VRARRGQATD SHSLAERARR  180
EKINARMKLL QELVPGCDKI QGTALVLDEI INHVQSLQRQ VEMLSMRLAS VNPRIDFNLD  240
TILASENGSL MDGSFNCTAM QVSWPHQVIE TEQPSHQHRQ LQQPQQWPFD VLNQRAWGRE  300
EDQDHGNDHN SLMYSVMRNE SVIQRKVYRS DQELGELRSP LTFVIDKVSV SQVSRNNGDG  360
EAGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527281e-174AK352728.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461653.10.0PREDICTED: transcription factor bHLH60-like isoform X2
SwissprotQ3EAI11e-137BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A0D3CUF01e-160A0A0D3CUF0_BRAOL; Uncharacterized protein
STRINGBo6g073190.11e-161(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-129bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]