PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5329_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 301aa    MW: 33430.3 Da    PI: 5.7982
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5329_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.18.6e-29221278259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDg++WrKYG+K+v+g+ +prsYYrCt++gC+v+k+versa   k+v+ tY g H+h 
  RrC5329_p1 221 DDGFRWRKYGRKVVTGNANPRSYYRCTYTGCKVTKHVERSAASMKLVVATYDGIHEHA 278
                 8********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-28208280IPR003657WRKY domain
SuperFamilySSF1182901.96E-24214280IPR003657WRKY domain
PROSITE profilePS5081127.68215280IPR003657WRKY domain
SMARTSM007746.7E-32220279IPR003657WRKY domain
PfamPF031069.3E-22221277IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MLDQNNNDRN PISETFPETN LSTNPQSEQR SGCLRESLAA RRGFDIPPLE LGSISPFANS  60
FRNPILVPSP ILIIPPCPIP NGAPPEMVQI SSAGDQTMII PNNNHPQGGS DDIPTEESFY  120
ITSHDSNACP IGAPLIPSSY SEVVVETDVM NHISLENGGE EDDMDREYNH EKDKVEDHNV  180
VVEPSSRKKR KMVVSNMMGV TRQNGTDMVI IQVESEEHHP DDGFRWRKYG RKVVTGNANP  240
RSYYRCTYTG CKVTKHVERS AASMKLVVAT YDGIHEHAPP PERIKKSGTK NQSGSSMSQR  300
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-21211280877Probable WRKY transcription factor 4
2lex_A6e-21211280877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013724799.21e-135probable WRKY transcription factor 10
TrEMBLA0A3P6BMP71e-137A0A3P6BMP7_BRACM; Uncharacterized protein
STRINGBo3g180930.11e-131(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102991733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.13e-52WRKY DNA-binding protein 10