PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC5305_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 376aa MW: 42542.9 Da PI: 7.8585

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5305_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98	6.5e-31	195	249	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH++F+e+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ RrC5305_p1 195 KTRIRWTQDLHDKFLECVDRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 249 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.91E-17	192	249	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.656	192	252	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-27	194	250	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.2E-24	195	250	IPR006447	Myb domain, plants
Pfam	PF00249	8.6E-8	199	248	IPR001005	SANT/Myb domain
Pfam	PF14379	3.3E-20	279	326	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MDNINFESSN ASQGSRLQLQ PQQPQPFNLQ DVDKMHYSQT SPWTTEMFSS FTPYDDGIAN 60 QSFSVQCSSS KPYPPSFHPY LYHQSLDPPS LDQPQSMVPV QPIPDQYLKP LSKRSCVNGL 120 PAINASSASY SLCFGASQDP QEACRRNYSN LNVTQLNFSL SHHQPKQTHS RFSSPSFSTC 180 GGSMIRNYGT VTGSKTRIRW TQDLHDKFLE CVDRLGGADK ATPKAILKLM DSEGLTIFHV 240 KSHLQKYRIA KYIPDPREGK FEKRSCSKEL SHLDTKTGVQ IKEALQLQLD VQRHLHEQLE 300 IQRNLQLRIE EQGKQLKLMI EQQQKTKESL LKSPSVEVSL LPLSASDHSP AAFSLPETEA 360 MMVTSYEDTQ FQTKIN

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MDNINFESSN ASQGSRLQLQ PQQPQPFNLQ DVDKMHYSQT SPWTTEMFSS FTPYDDGIAN  60
QSFSVQCSSS KPYPPSFHPY LYHQSLDPPS LDQPQSMVPV QPIPDQYLKP LSKRSCVNGL  120
PAINASSASY SLCFGASQDP QEACRRNYSN LNVTQLNFSL SHHQPKQTHS RFSSPSFSTC  180
GGSMIRNYGT VTGSKTRIRW TQDLHDKFLE CVDRLGGADK ATPKAILKLM DSEGLTIFHV  240
KSHLQKYRIA KYIPDPREGK FEKRSCSKEL SHLDTKTGVQ IKEALQLQLD VQRHLHEQLE  300
IQRNLQLRIE EQGKQLKLMI EQQQKTKESL LKSPSVEVSL LPLSASDHSP AAFSLPETEA  360
MMVTSYEDTQ FQTKIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-21	195	252	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-21	195	252	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-21	195	252	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-21	195	252	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-21	195	252	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-21	195	252	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-21	195	252	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-21	195	252	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018474858.1	0.0	PREDICTED: myb family transcription factor PHL5-like
Swissprot	Q0WVU3	1e-180	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A078JHF3	0.0	A0A078JHF3_BRANA; BnaA03g55680D protein
STRING	Bra005912.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5476	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-175	G2-like family protein