PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5256_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 195aa    MW: 22583.6 Da    PI: 9.8622
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5256_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W +eEd +l ++v+ +G g+W+ I+r+ g++R++ +c++rw +yl
       RrC5256_p2 14 RGLWKPEEDMILRRCVESHGEGNWADISRRSGLKRSGRSCRLRWKNYL 61
                     788*******************************************97 PP
2Myb_DNA-binding50.35.3e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
       RrC5256_p2  67 RGGMSPQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 112
                      6779******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.641965IPR017930Myb domain
SuperFamilySSF466891.43E-2912108IPR009057Homeodomain-like
SMARTSM007174.9E-151363IPR001005SANT/Myb domain
PfamPF002498.7E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-211568IPR009057Homeodomain-like
CDDcd001671.61E-111761No hitNo description
PROSITE profilePS5129419.83166116IPR017930Myb domain
SMARTSM007172.2E-1566114IPR001005SANT/Myb domain
PfamPF002491.7E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2369115IPR009057Homeodomain-like
CDDcd001673.08E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEKREEKRKS HAKRGLWKPE EDMILRRCVE SHGEGNWADI SRRSGLKRSG RSCRLRWKNY  60
LRPNIKRGGM SPQEQDLIIR MHKLLGNRWS LIAGRLPGRT DNEVKNYWNT HLNKKSNSRI  120
QNAPESGEAP PDKPVMSTGV RQSHGEEVTI TNWVEETNYF GYDVCMGSPL PLISHYTDNL  180
VFDPCSAFTD FFPLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-23141187110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1610KRKSH
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474701.11e-143PREDICTED: transcription factor MYB82-like
SwissprotQ9LTF71e-110MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A078J2101e-114A0A078J210_BRANA; BnaA03g12580D protein
TrEMBLA0A397ZUR01e-114A0A397ZUR0_BRACM; Uncharacterized protein
TrEMBLM4EJZ61e-114M4EJZ6_BRARP; Uncharacterized protein
STRINGBra029113.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.15e-99myb domain protein 82