PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5240_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 772aa    MW: 87046.4 Da    PI: 6.585
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5240_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.33.1e-22225278155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kp+++Wt  LH+ F++a++++ G +kA+Pk+ile+m+++ Lt+e+++SHLQkYR+
  RrC5240_p3 225 KPKIKWTDCLHDLFLQAIRHI-GLDKAVPKKILEFMNLQYLTRENIASHLQKYRI 278
                 79*******************.********************************6 PP
2Response_reg66.21.5e-22181321109
                   EEEESSSHHHHHHHHHHHHHTTC....EEEE..EESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
  Response_reg   1 vlivdDeplvrellrqalekegy....eeva..eaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                   v++vdD+p+++ ++ ++le+++y    +e++  +++d+ eal +lk+++  +Dli++D  mp+m+Gl+l k+i++e   +p+iv+++ ++    +e 
    RrC5240_p3  18 VMVVDDDPVFLGVMSRMLENSKYrdplMEITviAVKDPIEALSTLKTQRydIDLIVTDYYMPHMNGLQLKKQITREFGYIPVIVMSSDSN--IEHES 112
                   89*****************8887555644443599**********9999889*********************99999********7776..8899* PP

                   HHTTESEEEESS--HHHHHH CS
  Response_reg  90 lkaGakdflsKpfdpeelvk 109
                   l  Gak fl Kp+ p ++ +
    RrC5240_p3 113 LACGAKCFLPKPIRPTDIPQ 132
                   ***************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.6E-2715145No hitNo description
SMARTSM004481.5E-2016134IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.99E-2516150IPR011006CheY-like superfamily
PROSITE profilePS5011034.2817138IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.6E-1918133IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.81E-2319138No hitNo description
SuperFamilySSF466891.79E-16223282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-22224282IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-24225278IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MAFPKSFDSQ NSDLRINVMV VDDDPVFLGV MSRMLENSKY RDPLMEITVI AVKDPIEALS  60
TLKTQRYDID LIVTDYYMPH MNGLQLKKQI TREFGYIPVI VMSSDSNIEH ESLACGAKCF  120
LPKPIRPTDI PQIYQVALTH KRNNKSILWT EHNHRDTDVS IPQQIQLLTE QASVLKTNKK  180
RFSPRSDSRP VNSSNGGYVS TDSSGKHQKR KSNDGASDDW RPLKKPKIKW TDCLHDLFLQ  240
AIRHIGLDKA VPKKILEFMN LQYLTRENIA SHLQKYRIFL RKVAEQSFSC SRMLPTRGID  300
SIFLQAHLRD QHYNNYTPSS WYETSINNRS FYSKPIQGYG QSRLISNTAE PVRFNQMPYN  360
YMNRSSTYEP RGIGSNLTLP TKSNLSLPIQ PSPNDGRRSL FEPTVMANKT GQTSQVMGFG  420
QHGLSAINGN SFHNKMMSSY RSLVHNKPGM SSYECLAHNQ PGMSSFGSLT PQPGMMNYGN  480
LTPSQPGVSC YVNSTSDQPE MNNNGSLILN QLGLNNYGSS TLNQPEISSY GVSTSNQPRM  540
KNLGSLTPDQ HGMSRYRSLT SNQLEMSSHG ILYPNQPGLN SYGSIAYTAR VNNHESLTPN  600
QPGPSNFSCG MQFFLNNENT TYKPQPHDNA TTQPNLEIPQ LENLSLCDYL DSTDELPCDI  660
NNILIDHNKQ QEEAVYTNKF KLPANFENEL DQILSLEENG DGIFVNINQG HSGGETSNIV  720
AAPETNSPIF NMNPNHEQEQ DVPDFVDWSS LDPKDFANEY DFIDSLLSND MN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-20224284464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627368.10.0PREDICTED: putative two-component response regulator ARR21
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLA0A3P5ZUT10.0A0A3P5ZUT1_BRACM; Uncharacterized protein
STRINGBra005928.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21