PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC52381_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 129aa MW: 14459 Da PI: 8.611 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00056 | 89 | 104 | 1 | 16 |
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 +kC+ C+k++s+k+++ RrC52381_p1 89 FKCGQCNKTYSSKDEY 104 89**********9976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
SSLSSXSTSH SRLYRFSSSV RSRFPSASIR AVALEPELNE TPNSDKKDTE TQSVKVEETQ 60 VFACPVCYKP LMRKGPSGIN LQAIYRSGFK CGQCNKTYSS KDEYLDLTVT AGFDSFNEVK 120 PITTELFRY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018478395.1 | 2e-85 | PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic | ||||
Swissprot | Q0WPT7 | 6e-55 | Y2104_ARATH; Uncharacterized methyltransferase At2g41040, chloroplastic | ||||
TrEMBL | A0A0D3C5K2 | 4e-66 | A0A0D3C5K2_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo4g190670.1 | 6e-67 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24258 | 2 | 4 |
Publications ? help Back to Top | |||
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