PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC519_p7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 80aa MW: 9095.3 Da PI: 9.2793 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.6 | 2.9e-10 | 20 | 80 | 10 | 79 |
HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 ++k+++ ++p +f+++h +s++l+l++ s rsWev+l ++++ +++GWk+F +g++ +f RrC519_p7 20 SGKNSIPMIPDSFISNHV----KSTKLKLTTgVSDRSWEVEL--DGQR----FARGWKQFSVHHGVRNDEF 80 6788889*******8885....4557888887999*******..8888....9*************98775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.0E-8 | 8 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-7 | 9 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.065 | 11 | 80 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MVDPVMVSSN NKPIFFTDLS GKNSIPMIPD SFISNHVKST KLKLTTGVSD RSWEVELDGQ 60 RFARGWKQFS VHHGVRNDEF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018470434.1 | 3e-44 | PREDICTED: putative B3 domain-containing protein REM4 isoform X1 | ||||
Refseq | XP_018470435.1 | 2e-44 | PREDICTED: putative B3 domain-containing protein REM4 isoform X2 | ||||
Swissprot | Q9SB79 | 6e-23 | REM4_ARATH; Putative B3 domain-containing protein REM4 | ||||
TrEMBL | A0A3N6RFU8 | 4e-42 | A0A3N6RFU8_BRACR; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A3P6G227 | 1e-41 | A0A3P6G227_BRAOL; Uncharacterized protein | ||||
STRING | Bra011288.1-P | 5e-42 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9658 | 15 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31630.1 | 2e-25 | B3 family protein |
Publications ? help Back to Top | |||
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